Variant report

Variant	rs73353654
Chromosome Location	chr10:54766962-54766963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs28865980	0.94[AFR][1000 genomes]
rs56983999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57167764	1.00[AMR][1000 genomes]
rs57494549	0.94[AFR][1000 genomes]
rs61135358	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61307700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334909	1.00[AFR][1000 genomes]
rs73334915	0.80[AFR][1000 genomes]
rs73334922	0.83[AFR][1000 genomes]
rs73346352	1.00[AMR][1000 genomes]
rs73348081	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348297	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349812	0.94[AFR][1000 genomes]
rs73350009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350127	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350197	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1826571	chr10:54765608-54788821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895405	chr10:54765608-54824741	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54759800-54767200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:54764400-54771200	Enhancers	HepG2	liver
3	chr10:54764800-54767600	Enhancers	Liver	Liver
4	chr10:54765200-54782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:54765600-54767600	Enhancers	Fetal Intestine Small	intestine
6	chr10:54765600-54767600	Enhancers	Fetal Kidney	kidney
7	chr10:54765800-54767600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:54766000-54767600	Enhancers	Fetal Intestine Large	intestine
9	chr10:54766200-54767000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:54766200-54767600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:54766400-54767600	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:54766600-54767600	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr10:54766800-54767000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr10:54766800-54767000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:54766800-54767600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:54766800-54770000	Weak transcription	Stomach Mucosa	stomach

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