Variant report

Variant	rs73350111
Chromosome Location	chr10:54739555-54739556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:54739141-54739708	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr10:54739108-54739602	Hela-S3	cervix:	n/a	chr10:54739271-54739284 chr10:54739272-54739283
3	FOS	chr10:54739171-54739691	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr10:54739196-54739741	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr10:54739285-54739702	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr10:54739153-54739734	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr10:54739247-54739737	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr10:54739183-54739744	MCF10A-Er-Src	breast:	n/a	n/a
9	CEBPB	chr10:54739118-54739626	IMR90	lung:	n/a	chr10:54739271-54739284 chr10:54739272-54739283

Variant related genes	Relation type
ENSG00000227121	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs28865980	0.88[AFR][1000 genomes]
rs56983999	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57167764	1.00[AMR][1000 genomes]
rs57494549	0.88[AFR][1000 genomes]
rs61135358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61307700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334909	0.94[AFR][1000 genomes]
rs73346352	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349812	0.88[AFR][1000 genomes]
rs73350009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350012	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350197	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353654	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353667	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831877	chr10:54565135-54764638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv508584	chr10:54704765-54747382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54734600-54764600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:54737600-54743200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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