Variant report

Variant	rs57192135
Chromosome Location	chr10:95857121-95857122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55747054	1.00[AMR][1000 genomes]
rs56790972	1.00[AMR][1000 genomes]
rs56988586	1.00[AMR][1000 genomes]
rs58891392	1.00[AMR][1000 genomes]
rs60325334	1.00[AMR][1000 genomes]
rs7078986	1.00[AMR][1000 genomes]
rs74150405	1.00[AMR][1000 genomes]
rs74150492	1.00[AMR][1000 genomes]
rs74150494	1.00[AMR][1000 genomes]
rs74150496	1.00[AMR][1000 genomes]
rs74151031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151035	1.00[AMR][1000 genomes]
rs74153303	1.00[AMR][1000 genomes]
rs74153307	1.00[AMR][1000 genomes]
rs74153433	1.00[AMR][1000 genomes]
rs74153434	1.00[AMR][1000 genomes]
rs74153435	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95831400-95864200	Weak transcription	Colonic Mucosa	Colon
2	chr10:95836600-95861400	Weak transcription	Pancreas	Pancrea
3	chr10:95836600-95863400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
5	chr10:95843400-95864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:95845400-95860600	Weak transcription	Spleen	Spleen
7	chr10:95845400-95867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:95847800-95860600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:95849000-95862200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:95849000-95862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:95849200-95858600	Weak transcription	Fetal Brain Female	brain
12	chr10:95849200-95858600	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:95849200-95863200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:95850400-95863400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:95850600-95858400	Weak transcription	Fetal Lung	lung
16	chr10:95850800-95857400	Weak transcription	Right Atrium	heart
17	chr10:95851400-95857800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:95853400-95867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:95853600-95857200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:95853600-95857200	Weak transcription	NH-A	brain
21	chr10:95853600-95858600	Weak transcription	Fetal Stomach	stomach
22	chr10:95853600-95858600	Weak transcription	Ovary	ovary
23	chr10:95853600-95863000	Weak transcription	HSMMtube	muscle
24	chr10:95855000-95858400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:95855000-95861800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:95855200-95857200	Weak transcription	Osteobl	bone
27	chr10:95855200-95858600	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:95855200-95862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:95855400-95858600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:95856400-95857600	Weak transcription	Aorta	Aorta
31	chr10:95856600-95857800	Enhancers	A549	lung

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