Variant report

Variant	rs74153433
Chromosome Location	chr10:95655390-95655391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:95655267..95660464-chr10:95662376..95665623,6	K562	blood:
2	chr10:95655301..95659438-chr10:95663461..95667580,3	MCF-7	breast:
3	chr10:95647063..95650467-chr10:95654358..95657175,3	MCF-7	breast:
4	chr10:95633176..95633940-chr10:95654839..95655509,2	MCF-7	breast:
5	chr10:95459724..95462239-chr10:95654343..95656368,2	K562	blood:
6	chr10:95652670..95655434-chr10:96073530..96076292,2	MCF-7	breast:
7	chr10:95576767..95579702-chr10:95653982..95656369,2	K562	blood:

Variant related genes	Relation type
ENSG00000273450	Chromatin interaction

rs_ID	r²[population]
rs55747054	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56988586	1.00[AMR][1000 genomes]
rs57192135	1.00[AMR][1000 genomes]
rs58891392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60325334	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61285887	1.00[AMR][1000 genomes]
rs73314782	1.00[AMR][1000 genomes]
rs73318405	1.00[AMR][1000 genomes]
rs74150405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150494	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150496	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151031	1.00[AMR][1000 genomes]
rs74151032	1.00[AMR][1000 genomes]
rs74151034	1.00[AMR][1000 genomes]
rs74151035	1.00[AMR][1000 genomes]
rs74153434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153435	1.00[AMR][1000 genomes]

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95653200-95655600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:95653200-95655600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:95653200-95655800	Active TSS	Fetal Intestine Small	intestine
4	chr10:95654200-95655400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr10:95654200-95655400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:95654200-95655600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr10:95654200-95655600	Flanking Active TSS	GM12878-XiMat	blood
8	chr10:95654400-95655400	Flanking Active TSS	Hela-S3	cervix
9	chr10:95654400-95655600	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr10:95654400-95660600	Weak transcription	Aorta	Aorta
11	chr10:95654600-95655600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:95654600-95655600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:95654600-95655600	Flanking Active TSS	K562	blood
14	chr10:95654600-95657200	Weak transcription	Small Intestine	intestine
15	chr10:95654800-95655400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:95654800-95655600	Enhancers	Thymus	Thymus
17	chr10:95654800-95655600	Enhancers	HepG2	liver
18	chr10:95654800-95655800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:95654800-95655800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr10:95654800-95655800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:95654800-95660600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:95654800-95664600	Weak transcription	Gastric	stomach
23	chr10:95654800-95667800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:95654800-95671400	Weak transcription	NH-A	brain
25	chr10:95654800-95673600	Weak transcription	NHDF-Ad	bronchial
26	chr10:95654800-95676200	Weak transcription	Fetal Kidney	kidney
27	chr10:95654800-95676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:95654800-95677000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:95655000-95655400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:95655000-95655600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:95655000-95655600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
32	chr10:95655000-95655600	Enhancers	Liver	Liver
33	chr10:95655000-95655600	Enhancers	Fetal Lung	lung
34	chr10:95655000-95655800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
35	chr10:95655000-95655800	Enhancers	Adipose Nuclei	Adipose
36	chr10:95655000-95655800	Active TSS	Fetal Intestine Large	intestine
37	chr10:95655000-95655800	Enhancers	Ovary	ovary
38	chr10:95655000-95656000	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:95655000-95656200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:95655000-95656400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:95655000-95656800	Weak transcription	Lung	lung
42	chr10:95655000-95656800	Weak transcription	Pancreas	Pancrea
43	chr10:95655000-95656800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:95655000-95657200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:95655000-95657400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:95655000-95659200	Weak transcription	Left Ventricle	heart
47	chr10:95655000-95660400	Weak transcription	HSMM	muscle
48	chr10:95655000-95660600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:95655000-95662600	Weak transcription	Esophagus	oesophagus
50	chr10:95655000-95664000	Weak transcription	HUVEC	blood vessel

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