Variant report

Variant	rs57206692
Chromosome Location	chr6:33362870-33362871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr6:33362592-33363385	HEK293-T-REx	kidney:	n/a	chr6:33363194-33363215

No.	Distal block	Cell Line	Cell type
1	chr6:32936666..32939842-chr6:33360330..33364086,3	MCF-7	breast:
2	chr6:33362550..33366699-chr6:33373091..33374833,4	MCF-7	breast:
3	chr6:33278075..33283012-chr6:33360979..33364412,4	MCF-7	breast:
4	chr6:33356271..33363521-chr6:33371085..33380351,32	K562	blood:

Variant related genes	Relation type
KIFC1	TF binding region
ENSG00000112511	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000204256	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57991968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59507163	0.83[AFR][1000 genomes]
rs6901334	1.00[AMR][1000 genomes]
rs6930593	1.00[AMR][1000 genomes]
rs73402303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402305	0.84[AFR][1000 genomes]
rs73402312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402373	1.00[AMR][1000 genomes]
rs73402386	1.00[AMR][1000 genomes]
rs73416054	0.86[AFR][1000 genomes]
rs9469425	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33359800-33363400	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr6:33360000-33371000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:33360000-33377400	Weak transcription	Small Intestine	intestine
4	chr6:33360000-33377600	Weak transcription	Right Atrium	heart
5	chr6:33360400-33377600	Weak transcription	Esophagus	oesophagus
6	chr6:33360400-33377600	Weak transcription	Lung	lung
7	chr6:33360800-33365800	Weak transcription	Stomach Mucosa	stomach
8	chr6:33360800-33371000	Weak transcription	Placenta	Placenta
9	chr6:33360800-33371200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:33360800-33377200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:33361000-33363000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:33361000-33364000	Enhancers	Fetal Heart	heart
13	chr6:33361000-33365400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:33361000-33371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:33361000-33371200	Weak transcription	Gastric	stomach
16	chr6:33361000-33371400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:33361000-33372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:33361000-33377200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:33361200-33363000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:33361200-33363400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:33361200-33363400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:33361200-33363400	Enhancers	HMEC	breast
23	chr6:33361200-33363400	Enhancers	HUVEC	blood vessel
24	chr6:33361200-33363600	Enhancers	Osteobl	bone
25	chr6:33361200-33363800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:33361200-33363800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:33361200-33364000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:33361200-33364600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:33361200-33365400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:33361200-33365400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:33361200-33365600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:33361200-33365600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:33361200-33365800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:33361200-33366000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:33361200-33366600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:33361200-33370600	Weak transcription	Fetal Intestine Large	intestine
37	chr6:33361200-33371000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:33361200-33371200	Weak transcription	Spleen	Spleen
39	chr6:33361200-33371400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:33361200-33377200	Weak transcription	Colonic Mucosa	Colon
41	chr6:33361200-33377800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:33361400-33363200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:33361400-33363400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:33361400-33364000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:33361400-33365400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:33361400-33371200	Weak transcription	Fetal Kidney	kidney
47	chr6:33361600-33363400	Genic enhancers	Fetal Thymus	thymus
48	chr6:33361600-33369800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:33361600-33377200	Weak transcription	Primary B cells from cord blood	blood
50	chr6:33361800-33363000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links