Variant report

Variant	rs9469425
Chromosome Location	chr6:33423698-33423699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33422362..33424306-chr6:33561012..33562772,2	K562	blood:
2	chr6:33238561..33240428-chr6:33421904..33423704,2	K562	blood:
3	chr6:33385453..33389637-chr6:33419628..33424957,5	MCF-7	breast:
4	chr6:33377039..33379614-chr6:33421781..33424452,2	K562	blood:
5	chr6:33376983..33379283-chr6:33422704..33424364,2	MCF-7	breast:
6	chr6:33392449..33400629-chr6:33419013..33424035,12	MCF-7	breast:
7	chr6:33384548..33387250-chr6:33422114..33424496,2	K562	blood:
8	chr6:33395899..33401993-chr6:33420102..33423796,11	MCF-7	breast:
9	chr6:33423454..33426241-chr6:33429192..33432961,4	MCF-7	breast:
10	chr6:33406190..33414491-chr6:33419287..33424467,10	MCF-7	breast:
11	chr6:33264374..33267492-chr6:33422246..33424652,3	K562	blood:
12	chr6:33398677..33403495-chr6:33419995..33423723,6	K562	blood:
13	chr6:33358950..33361251-chr6:33421997..33423819,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237441	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000197251	Chromatin interaction
ENSG00000197283	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000112511	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57206692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57991968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59507163	0.86[AFR][1000 genomes]
rs6901334	1.00[AMR][1000 genomes]
rs6930593	1.00[AMR][1000 genomes]
rs73402303	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402305	0.85[AFR][1000 genomes]
rs73402312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402373	1.00[AMR][1000 genomes]
rs73402386	1.00[AMR][1000 genomes]
rs73416054	0.83[AFR][1000 genomes]
rs9469439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33422600-33425400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:33423000-33423800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:33423000-33423800	Weak transcription	Aorta	Aorta
4	chr6:33423000-33423800	Enhancers	Fetal Brain Male	brain
5	chr6:33423200-33423800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:33423200-33423800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:33423200-33423800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:33423200-33423800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:33423200-33423800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:33423200-33424000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:33423200-33424000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:33423200-33424200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:33423200-33424200	Genic enhancers	Pancreas	Pancrea
14	chr6:33423200-33424400	Weak transcription	Primary B cells from cord blood	blood
15	chr6:33423200-33424400	Strong transcription	Ovary	ovary
16	chr6:33423200-33424600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:33423200-33424600	Strong transcription	Fetal Intestine Small	intestine
18	chr6:33423200-33424600	Strong transcription	Thymus	Thymus
19	chr6:33423200-33425200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:33423200-33425200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:33423200-33425400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:33423200-33425400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:33423200-33426200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:33423200-33426400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:33423200-33426600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:33423200-33426600	Weak transcription	Brain Angular Gyrus	brain
27	chr6:33423200-33426600	Weak transcription	Fetal Kidney	kidney
28	chr6:33423200-33426600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:33423200-33429000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:33423400-33423800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:33423400-33423800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:33423400-33423800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:33423400-33423800	Weak transcription	Liver	Liver
34	chr6:33423400-33423800	Genic enhancers	Brain Germinal Matrix	brain
35	chr6:33423400-33423800	Genic enhancers	Colon Smooth Muscle	Colon
36	chr6:33423400-33423800	Genic enhancers	Fetal Brain Female	brain
37	chr6:33423400-33423800	Genic enhancers	Fetal Muscle Trunk	muscle
38	chr6:33423400-33423800	Weak transcription	Placenta	Placenta
39	chr6:33423400-33423800	Transcr. at gene 5' and 3'	Dnd41	blood
40	chr6:33423400-33423800	Genic enhancers	HepG2	liver
41	chr6:33423400-33423800	Weak transcription	HSMM	muscle
42	chr6:33423400-33423800	Transcr. at gene 5' and 3'	Osteobl	bone
43	chr6:33423400-33424000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:33423400-33424000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:33423400-33424000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:33423400-33424000	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr6:33423400-33424200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr6:33423400-33424200	Strong transcription	Fetal Intestine Large	intestine
49	chr6:33423400-33424400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:33423400-33424400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin

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