Variant report

Variant	rs73402373
Chromosome Location	chr6:33470379-33470380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10214667	0.82[AFR][1000 genomes]
rs28488940	0.84[AFR][1000 genomes]
rs28578775	0.80[AFR][1000 genomes]
rs28851930	0.81[AFR][1000 genomes]
rs57206692	1.00[AMR][1000 genomes]
rs57991968	1.00[AMR][1000 genomes]
rs60023810	0.84[AFR][1000 genomes]
rs60289279	0.81[AFR][1000 genomes]
rs6901334	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925399	0.81[AFR][1000 genomes]
rs6930593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402303	1.00[AMR][1000 genomes]
rs73402312	1.00[AMR][1000 genomes]
rs73402320	1.00[AMR][1000 genomes]
rs73402380	0.82[AFR][1000 genomes]
rs73402381	0.82[AFR][1000 genomes]
rs73402386	1.00[AMR][1000 genomes]
rs7742848	0.84[AFR][1000 genomes]
rs9461863	1.00[AFR][1000 genomes]
rs9461873	0.86[AFR][1000 genomes]
rs9469425	1.00[AMR][1000 genomes]
rs9469439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469442	0.82[AFR][1000 genomes]
rs9469480	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33453000-33474000	Weak transcription	Right Atrium	heart
2	chr6:33470000-33470800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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