Variant report
| Variant | rs9469439 |
|---|---|
| Chromosome Location | chr6:33467259-33467260 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:33463213..33467360-chr6:33468926..33472563,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10214667 | 0.80[AFR][1000 genomes] |
| rs28488940 | 0.80[AFR][1000 genomes] |
| rs28578775 | 0.80[AFR][1000 genomes] |
| rs28851930 | 0.81[AFR][1000 genomes] |
| rs57206692 | 1.00[AMR][1000 genomes] |
| rs57991968 | 1.00[AMR][1000 genomes] |
| rs60023810 | 0.84[AFR][1000 genomes] |
| rs6901334 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6925399 | 0.81[AFR][1000 genomes] |
| rs6930593 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73402303 | 1.00[AMR][1000 genomes] |
| rs73402312 | 1.00[AMR][1000 genomes] |
| rs73402320 | 1.00[AMR][1000 genomes] |
| rs73402373 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73402380 | 0.80[AFR][1000 genomes] |
| rs73402381 | 0.80[AFR][1000 genomes] |
| rs73402386 | 1.00[AMR][1000 genomes] |
| rs7742848 | 0.80[AFR][1000 genomes] |
| rs9461863 | 0.96[AFR][1000 genomes] |
| rs9461873 | 0.86[AFR][1000 genomes] |
| rs9469425 | 1.00[AMR][1000 genomes] |
| rs9469442 | 0.80[AFR][1000 genomes] |
| rs9469480 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830637 | chr6:33329365-33510704 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
| 2 | nsv602832 | chr6:33382241-33520221 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:33453000-33474000 | Weak transcription | Right Atrium | heart |
