Variant report

Variant	rs57255089
Chromosome Location	chr1:221801904-221801905
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10082031	1.00[EUR][1000 genomes]
rs10082119	1.00[EUR][1000 genomes]
rs10449312	1.00[EUR][1000 genomes]
rs10495171	1.00[EUR][1000 genomes]
rs11118769	1.00[EUR][1000 genomes]
rs11118771	1.00[EUR][1000 genomes]
rs12058091	1.00[EUR][1000 genomes]
rs12063275	1.00[EUR][1000 genomes]
rs12063464	1.00[EUR][1000 genomes]
rs12064012	1.00[EUR][1000 genomes]
rs12064162	1.00[EUR][1000 genomes]
rs12067974	1.00[EUR][1000 genomes]
rs12075242	1.00[EUR][1000 genomes]
rs12079769	1.00[EUR][1000 genomes]
rs12081273	1.00[EUR][1000 genomes]
rs12081326	1.00[EUR][1000 genomes]
rs12082182	1.00[EUR][1000 genomes]
rs12082815	1.00[EUR][1000 genomes]
rs12082874	1.00[EUR][1000 genomes]
rs12084065	1.00[EUR][1000 genomes]
rs12086252	1.00[EUR][1000 genomes]
rs12086291	1.00[EUR][1000 genomes]
rs12088112	1.00[EUR][1000 genomes]
rs12089796	1.00[EUR][1000 genomes]
rs12092891	1.00[EUR][1000 genomes]
rs12093053	1.00[EUR][1000 genomes]
rs12094911	1.00[EUR][1000 genomes]
rs12095828	1.00[EUR][1000 genomes]
rs12095905	1.00[EUR][1000 genomes]
rs13376358	0.88[EUR][1000 genomes]
rs17010395	1.00[EUR][1000 genomes]
rs17010397	1.00[EUR][1000 genomes]
rs17010409	1.00[EUR][1000 genomes]
rs17010428	1.00[EUR][1000 genomes]
rs17010434	1.00[EUR][1000 genomes]
rs17010457	1.00[EUR][1000 genomes]
rs17010463	1.00[EUR][1000 genomes]
rs1890243	1.00[EUR][1000 genomes]
rs1973728	1.00[EUR][1000 genomes]
rs28515661	1.00[EUR][1000 genomes]
rs56971545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58173559	1.00[EUR][1000 genomes]
rs58482927	1.00[EUR][1000 genomes]
rs59383649	1.00[EUR][1000 genomes]
rs59680640	1.00[EUR][1000 genomes]
rs59837278	1.00[EUR][1000 genomes]
rs60152531	1.00[EUR][1000 genomes]
rs60217573	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60383455	0.81[AFR][1000 genomes]
rs61079406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61221236	0.86[EUR][1000 genomes]
rs73117552	0.88[EUR][1000 genomes]
rs74145360	1.00[EUR][1000 genomes]
rs74145363	1.00[EUR][1000 genomes]
rs74145364	1.00[EUR][1000 genomes]
rs74145365	1.00[EUR][1000 genomes]
rs74145366	1.00[EUR][1000 genomes]
rs74145367	1.00[EUR][1000 genomes]
rs74145373	0.94[EUR][1000 genomes]
rs74145375	1.00[EUR][1000 genomes]
rs74145376	0.94[EUR][1000 genomes]
rs74145378	1.00[EUR][1000 genomes]
rs74145400	1.00[EUR][1000 genomes]
rs9308402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1011037	chr1:221756526-221809552	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221801000-221802200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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