Variant report

Variant	rs59680640
Chromosome Location	chr1:221810047-221810048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221809737..221812639-chr1:221914030..221916413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143507	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10082031	1.00[EUR][1000 genomes]
rs10082119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10449312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10495171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11118769	1.00[EUR][1000 genomes]
rs11118771	1.00[EUR][1000 genomes]
rs12058091	1.00[EUR][1000 genomes]
rs12063275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079769	1.00[EUR][1000 genomes]
rs12081273	1.00[EUR][1000 genomes]
rs12081326	1.00[EUR][1000 genomes]
rs12082182	1.00[EUR][1000 genomes]
rs12082815	1.00[EUR][1000 genomes]
rs12082874	1.00[EUR][1000 genomes]
rs12084065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086252	1.00[EUR][1000 genomes]
rs12086291	1.00[EUR][1000 genomes]
rs12088112	1.00[EUR][1000 genomes]
rs12089796	1.00[EUR][1000 genomes]
rs12092891	1.00[EUR][1000 genomes]
rs12093053	1.00[EUR][1000 genomes]
rs12094911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095828	1.00[EUR][1000 genomes]
rs12095905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376358	0.88[EUR][1000 genomes]
rs17010395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1890243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1973728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28515661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56971545	1.00[EUR][1000 genomes]
rs57255089	1.00[EUR][1000 genomes]
rs58173559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58482927	1.00[EUR][1000 genomes]
rs59383649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59837278	1.00[EUR][1000 genomes]
rs60152531	1.00[EUR][1000 genomes]
rs60217573	1.00[EUR][1000 genomes]
rs61079406	1.00[EUR][1000 genomes]
rs61221236	0.86[EUR][1000 genomes]
rs73117552	0.88[EUR][1000 genomes]
rs74145360	1.00[EUR][1000 genomes]
rs74145363	1.00[EUR][1000 genomes]
rs74145364	1.00[EUR][1000 genomes]
rs74145365	1.00[EUR][1000 genomes]
rs74145366	1.00[EUR][1000 genomes]
rs74145367	1.00[EUR][1000 genomes]
rs74145373	0.94[EUR][1000 genomes]
rs74145375	1.00[EUR][1000 genomes]
rs74145376	0.94[EUR][1000 genomes]
rs74145378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74145394	1.00[AMR][1000 genomes]
rs74145400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9308402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221806000-221811200	Weak transcription	Fetal Heart	heart
2	chr1:221806200-221813600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:221809200-221811000	Weak transcription	HMEC	breast
4	chr1:221810000-221811200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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