Variant report

Variant	rs73117552
Chromosome Location	chr1:221783148-221783149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221782617..221784755-chr1:221788045..221789610,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10082031	0.88[EUR][1000 genomes]
rs10082119	0.88[EUR][1000 genomes]
rs10449312	0.88[EUR][1000 genomes]
rs10495171	0.88[EUR][1000 genomes]
rs11118769	0.88[EUR][1000 genomes]
rs11118771	0.88[EUR][1000 genomes]
rs12058091	0.88[EUR][1000 genomes]
rs12063275	0.88[EUR][1000 genomes]
rs12063464	0.88[EUR][1000 genomes]
rs12064012	0.88[EUR][1000 genomes]
rs12064162	0.88[EUR][1000 genomes]
rs12067974	0.88[EUR][1000 genomes]
rs12075242	0.88[EUR][1000 genomes]
rs12079769	0.88[EUR][1000 genomes]
rs12081273	0.88[EUR][1000 genomes]
rs12081326	0.88[EUR][1000 genomes]
rs12082182	0.88[EUR][1000 genomes]
rs12082815	0.88[EUR][1000 genomes]
rs12082874	0.88[EUR][1000 genomes]
rs12084065	0.88[EUR][1000 genomes]
rs12086252	0.88[EUR][1000 genomes]
rs12086291	0.88[EUR][1000 genomes]
rs12088112	0.88[EUR][1000 genomes]
rs12089796	0.88[EUR][1000 genomes]
rs12092891	0.88[EUR][1000 genomes]
rs12093053	0.88[EUR][1000 genomes]
rs12094911	0.88[EUR][1000 genomes]
rs12095828	0.88[EUR][1000 genomes]
rs12095905	0.88[EUR][1000 genomes]
rs12564261	0.81[ASN][1000 genomes]
rs12566486	1.00[ASN][1000 genomes]
rs13376358	1.00[EUR][1000 genomes]
rs1338075	1.00[ASN][1000 genomes]
rs1342088	0.90[ASN][1000 genomes]
rs17010269	0.81[ASN][1000 genomes]
rs17010395	0.88[EUR][1000 genomes]
rs17010397	0.88[EUR][1000 genomes]
rs17010405	0.92[ASN][1000 genomes]
rs17010409	0.88[EUR][1000 genomes]
rs17010414	0.94[ASN][1000 genomes]
rs17010424	0.94[ASN][1000 genomes]
rs17010428	0.88[EUR][1000 genomes]
rs17010434	0.88[EUR][1000 genomes]
rs17010457	0.88[EUR][1000 genomes]
rs17010463	0.88[EUR][1000 genomes]
rs17010484	0.83[ASN][1000 genomes]
rs1890243	0.88[EUR][1000 genomes]
rs1973728	0.88[EUR][1000 genomes]
rs28515661	0.88[EUR][1000 genomes]
rs4846719	0.81[ASN][1000 genomes]
rs4846720	0.81[ASN][1000 genomes]
rs56971545	0.88[EUR][1000 genomes]
rs57255089	0.88[EUR][1000 genomes]
rs58173559	0.88[EUR][1000 genomes]
rs58482927	0.88[EUR][1000 genomes]
rs59383649	0.88[EUR][1000 genomes]
rs59680640	0.88[EUR][1000 genomes]
rs59837278	0.88[EUR][1000 genomes]
rs60152531	0.88[EUR][1000 genomes]
rs60217573	0.88[EUR][1000 genomes]
rs61079406	0.88[EUR][1000 genomes]
rs74145360	0.88[EUR][1000 genomes]
rs74145363	0.88[EUR][1000 genomes]
rs74145364	0.88[EUR][1000 genomes]
rs74145365	0.88[EUR][1000 genomes]
rs74145366	0.88[EUR][1000 genomes]
rs74145367	0.88[EUR][1000 genomes]
rs74145373	0.82[EUR][1000 genomes]
rs74145375	0.88[EUR][1000 genomes]
rs74145376	0.82[EUR][1000 genomes]
rs74145378	0.88[EUR][1000 genomes]
rs74145400	0.88[EUR][1000 genomes]
rs9308402	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1011037	chr1:221756526-221809552	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221771800-221784600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221780000-221785200	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:221780000-221785400	Weak transcription	Adipose Nuclei	Adipose
4	chr1:221780200-221785000	Weak transcription	Brain Germinal Matrix	brain
5	chr1:221780200-221785200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:221780200-221785200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:221780200-221785200	Weak transcription	NHDF-Ad	bronchial
8	chr1:221780400-221785000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:221782800-221785200	Weak transcription	A549	lung

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