Variant report

Variant	rs572871550
Chromosome Location	chr11:55321483-55321484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55321480-55321530	BJ	skin:	n/a
2	chr11:55321480-55321530	MCF-7	breast:	n/a
3	chr11:55321480-55321530	Hepatocyte	liver:	n/a
4	chr11:55321480-55321530	Hela-S3	cervix:	n/a
5	chr11:55321480-55321530	PFSK-1	brain:	n/a
6	chr11:55321480-55321530	HEK293	kidney:	embryo
7	chr11:55321480-55321530	HepG2	liver:	n/a
8	chr11:55321480-55321530	PrEC	prostate:	n/a
9	chr11:55321480-55321530	ECC-1	luminal epithelium:	n/a
10	chr11:55321480-55321530	HCT-116	colon:	n/a
11	chr11:55321480-55321530	T-47D	breast:	n/a
12	chr11:55321480-55321530	HCM	heart:	n/a
13	chr11:55321480-55321530	Jurkat	blood:	n/a
14	chr11:55321480-55321530	LNCaP	prostate:	n/a
15	chr11:55321480-55321530	AG04449	skin:	fetal
16	chr11:55321480-55321530	ovcar-3	ovarian:	n/a
17	chr11:55321480-55321530	GM12878	blood:	n/a
18	chr11:55321480-55321530	SAEC	small airway:	n/a
19	chr11:55321480-55321530	HAEpiC	amniotic membrane:	n/a
20	chr11:55321480-55321530	A549	lung:	n/a
21	chr11:55321480-55321530	HRCEpiC	kidney:	n/a
22	chr11:55321480-55321530	GM12891	blood:	n/a
23	chr11:55321480-55321530	MCF10A-Er-Src	breast:	n/a
24	chr11:55321480-55321530	Caco-2	colon:	n/a
25	chr11:55321480-55321530	HCPEpiC	choroid plexus:	n/a
26	chr11:55321480-55321530	ProgFib	skin:	n/a
27	chr11:55321480-55321530	RPTEC	kidney:	n/a
28	chr11:55321480-55321530	BE2_C	brain:	n/a
29	chr11:55321480-55321530	NT2-D1	testis:	n/a
30	chr11:55321480-55321530	HEEpiC	esophagus:	n/a
31	chr11:55321480-55321530	HCF	heart:	n/a
32	chr11:55321480-55321530	AG09309	skin:	n/a
33	chr11:55321480-55321530	NHBE	bronchial:	n/a
34	chr11:55321480-55321530	H1-hESC	embryonic stem cell:	embryo
35	chr11:55321480-55321530	HUVEC	blood vessel:	n/a
36	chr11:55321480-55321530	HL-60	blood:	n/a
37	chr11:55321480-55321530	NH-A	brain:	n/a
38	chr11:55321480-55321530	K562	blood:	n/a
39	chr11:55321480-55321530	SK-N-MC	brain:	n/a
40	chr11:55321480-55321530	GM06990	blood:	n/a
41	chr11:55321480-55321530	SK-N-SH	brain:	n/a
42	chr11:55321480-55321530	HNPCEpiC	eye:	n/a
43	chr11:55321480-55321530	SKMC	muscle:	n/a
44	chr11:55321480-55321530	HIPEpiC	eye:	n/a
45	chr11:55321480-55321530	HRE	kidney:	n/a
46	chr11:55321480-55321530	CMK	blood:	n/a
47	chr11:55321480-55321530	IMR90	lung:	fetal
48	chr11:55321480-55321530	SK-N-SH_RA	brain:	n/a
49	chr11:55321480-55321530	GM12892	blood:	n/a
50	chr11:55321480-55321530	HRPEpiC	eye:	n/a

No data

Variant related genes	Relation type
OR4C15	CpG island

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
11	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
12	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
13	nsv1036325	chr11:55119267-55442306	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	19 gene(s)	inside rSNPs	diseases
14	esv2751031	chr11:55121706-55340753	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
15	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
16	nsv518225	chr11:55171677-55408700	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
17	esv2758271	chr11:55222420-55621884	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
18	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
19	nsv832154	chr11:55222427-55408933	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	10 gene(s)	inside rSNPs	diseases
20	nsv1046475	chr11:55241003-55381810	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
21	nsv1047882	chr11:55241003-55386385	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
22	esv2751032	chr11:55276602-55355722	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
23	nsv832155	chr11:55277241-55432666	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
24	nsv916314	chr11:55289861-55495986	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv1048237	chr11:55312533-55363328	ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
26	nsv554801	chr11:55314151-55624360	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	nsv428256	chr11:55317076-55621884	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	nsv1052441	chr11:55319822-55363328	Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
29	nsv982947	chr11:55320372-55321812	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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