Variant report
| Variant | rs57302629 |
|---|---|
| Chromosome Location | chr20:24035305-24035306 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:19198505..19201167-chr20:24035131..24037603,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs28578736 | 1.00[AMR][1000 genomes] |
| rs56296104 | 1.00[AMR][1000 genomes] |
| rs57522977 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58508170 | 1.00[AMR][1000 genomes] |
| rs59273058 | 1.00[AMR][1000 genomes] |
| rs59470315 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73902532 | 1.00[AMR][1000 genomes] |
| rs73902537 | 1.00[AMR][1000 genomes] |
| rs73902543 | 1.00[AMR][1000 genomes] |
| rs73902551 | 1.00[AMR][1000 genomes] |
| rs73902561 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73902564 | 1.00[AMR][1000 genomes] |
| rs73902570 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73902578 | 1.00[AMR][1000 genomes] |
| rs73902591 | 1.00[AMR][1000 genomes] |
| rs8113949 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063474 | chr20:23918394-24048069 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv1056491 | chr20:23955040-24105080 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24033800-24041600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
