Variant report

Variant	rs73902543
Chromosome Location	chr20:23999202-23999203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28578736	1.00[AMR][1000 genomes]
rs56296104	1.00[AMR][1000 genomes]
rs57302629	1.00[AMR][1000 genomes]
rs57522977	1.00[AMR][1000 genomes]
rs58508170	1.00[AMR][1000 genomes]
rs59273058	1.00[AMR][1000 genomes]
rs59470315	1.00[AMR][1000 genomes]
rs73902532	1.00[AMR][1000 genomes]
rs73902537	1.00[AMR][1000 genomes]
rs73902551	1.00[AMR][1000 genomes]
rs73902561	1.00[AMR][1000 genomes]
rs73902564	1.00[AMR][1000 genomes]
rs73902570	1.00[AMR][1000 genomes]
rs73902578	1.00[AMR][1000 genomes]
rs73902591	1.00[AMR][1000 genomes]
rs8113949	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv585731	chr20:23989027-24024259	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23997600-24000000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr20:23997600-24000200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:23998000-24000000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:23998000-24000000	Enhancers	NHEK	skin
5	chr20:23998200-24000000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:23998200-24000000	Enhancers	HMEC	breast
7	chr20:23999000-24000000	Enhancers	HSMMtube	muscle
8	chr20:23999200-23999800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links