Variant report

Variant	rs73902570
Chromosome Location	chr20:24027411-24027412
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28578736	1.00[AMR][1000 genomes]
rs56296104	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57302629	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57522977	1.00[AMR][1000 genomes]
rs58508170	1.00[AMR][1000 genomes]
rs59273058	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59470315	1.00[AMR][1000 genomes]
rs73902532	1.00[AMR][1000 genomes]
rs73902537	1.00[AMR][1000 genomes]
rs73902543	1.00[AMR][1000 genomes]
rs73902551	1.00[AMR][1000 genomes]
rs73902561	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902564	1.00[AMR][1000 genomes]
rs73902578	1.00[AMR][1000 genomes]
rs73902591	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8113949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24017600-24033600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24024400-24027800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:24025200-24028000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr20:24025200-24028000	Enhancers	Dnd41	blood
5	chr20:24025800-24028000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr20:24026000-24027800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr20:24026000-24028000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr20:24026200-24027800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:24026400-24028200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr20:24026600-24028000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr20:24026800-24028000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr20:24026800-24028200	Enhancers	Primary T cells from cord blood	blood
13	chr20:24026800-24030800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr20:24026800-24032200	Weak transcription	Fetal Thymus	thymus
15	chr20:24026800-24034200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr20:24027000-24027600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr20:24027000-24029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr20:24027000-24030400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr20:24027200-24027600	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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