Variant report

Variant	rs59470315
Chromosome Location	chr20:24055128-24055129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28578736	1.00[AMR][1000 genomes]
rs56296104	1.00[AMR][1000 genomes]
rs57302629	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57522977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58508170	1.00[AMR][1000 genomes]
rs59273058	1.00[AMR][1000 genomes]
rs73902532	1.00[AMR][1000 genomes]
rs73902537	1.00[AMR][1000 genomes]
rs73902543	1.00[AMR][1000 genomes]
rs73902551	1.00[AMR][1000 genomes]
rs73902561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902564	1.00[AMR][1000 genomes]
rs73902570	1.00[AMR][1000 genomes]
rs73902578	1.00[AMR][1000 genomes]
rs73902591	1.00[AMR][1000 genomes]
rs8113949	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24052200-24056400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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