Variant report

Variant	rs57337895
Chromosome Location	chr9:100766085-100766086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100682069..100685909-chr9:100763582..100766887,4	K562	blood:
2	chr9:100680633..100684807-chr9:100763582..100766480,4	K562	blood:
3	chr9:100764058..100766868-chr9:100813961..100815903,2	K562	blood:
4	chr9:100747508..100749189-chr9:100765582..100767848,2	MCF-7	breast:
5	chr9:100690827..100692565-chr9:100765740..100767305,2	K562	blood:
6	chr9:100765048..100766771-chr9:100766811..100769374,2	MCF-7	breast:
7	chr9:100763380..100766123-chr9:100768484..100771216,3	MCF-7	breast:
8	chr9:100691065..100693208-chr9:100764487..100767305,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12377347	1.00[AFR][1000 genomes]
rs16925952	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16925999	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55966274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56160217	1.00[ASN][1000 genomes]
rs57210691	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57559429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57769363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58253425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58506642	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60782937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62575562	1.00[ASN][1000 genomes]
rs73490697	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492709	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492719	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492724	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100748000-100767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:100749200-100767200	Weak transcription	Esophagus	oesophagus
3	chr9:100750000-100767200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:100750000-100767400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:100752000-100784000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:100753000-100767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:100753000-100768400	Weak transcription	Fetal Heart	heart
8	chr9:100753000-100769000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:100753400-100767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:100753600-100767200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:100754600-100784200	Strong transcription	Dnd41	blood
12	chr9:100754600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:100755200-100782200	Strong transcription	HepG2	liver
14	chr9:100755200-100783800	Strong transcription	NHEK	skin
15	chr9:100755400-100783000	Weak transcription	Stomach Mucosa	stomach
16	chr9:100755600-100769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:100755600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:100755800-100782200	Strong transcription	K562	blood
19	chr9:100756000-100777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:100756200-100767200	Weak transcription	Colonic Mucosa	Colon
21	chr9:100756400-100767200	Weak transcription	Spleen	Spleen
22	chr9:100756400-100772600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:100756400-100783600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:100756400-100783800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr9:100756400-100784400	Strong transcription	Fetal Thymus	thymus
26	chr9:100756600-100767600	Weak transcription	Brain Germinal Matrix	brain
27	chr9:100756600-100785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:100756800-100771600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:100756800-100771800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr9:100756800-100781200	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:100756800-100783000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:100756800-100783400	Strong transcription	HMEC	breast
33	chr9:100757000-100768000	Strong transcription	Left Ventricle	heart
34	chr9:100757000-100769400	Strong transcription	HUVEC	blood vessel
35	chr9:100757000-100771000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:100757000-100771600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:100757000-100771600	Strong transcription	HSMM	muscle
38	chr9:100757000-100771800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr9:100757000-100772200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr9:100757000-100772600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr9:100757000-100781000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr9:100757000-100785200	Strong transcription	Placenta	Placenta
43	chr9:100757200-100783600	Strong transcription	Liver	Liver
44	chr9:100757400-100770800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:100757400-100784000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:100757600-100772600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr9:100757600-100784400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:100757800-100772400	Strong transcription	Primary B cells from cord blood	blood
49	chr9:100757800-100782200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:100758200-100767200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links