Variant report

Variant	rs73492720
Chromosome Location	chr9:100787653-100787654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100784033..100788653-chr9:100792674..100797277,7	K562	blood:
2	chr9:100744444..100747134-chr9:100785763..100788080,2	MCF-7	breast:
3	chr9:100769812..100771539-chr9:100787436..100790076,2	MCF-7	breast:
4	chr9:100786498..100789736-chr9:100818544..100820292,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000212521	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12377347	0.95[AFR][1000 genomes]
rs16925952	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16925999	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55966274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56160217	1.00[ASN][1000 genomes]
rs57210691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57337895	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57559429	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57769363	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58253425	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58506642	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60782937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62575562	1.00[ASN][1000 genomes]
rs73490697	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492709	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492724	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100770600-100788400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:100778800-100788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:100780000-100788800	Weak transcription	Fetal Kidney	kidney
4	chr9:100781400-100788200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:100781800-100788800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:100781800-100791800	Weak transcription	Hela-S3	cervix
7	chr9:100781800-100796800	Weak transcription	Brain Anterior Caudate	brain
8	chr9:100781800-100796800	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:100782000-100787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:100782000-100796800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr9:100782200-100788000	Weak transcription	Colonic Mucosa	Colon
12	chr9:100782200-100788600	Weak transcription	K562	blood
13	chr9:100782200-100792400	Weak transcription	Aorta	Aorta
14	chr9:100782200-100794200	Weak transcription	NHDF-Ad	bronchial
15	chr9:100782200-100796800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:100782200-100796800	Weak transcription	HepG2	liver
17	chr9:100782400-100796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:100782400-100797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:100783000-100791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:100783600-100788400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:100783600-100789200	Weak transcription	Brain Germinal Matrix	brain
22	chr9:100783600-100789400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:100783600-100796800	Weak transcription	Liver	Liver
24	chr9:100783600-100796800	Weak transcription	A549	lung
25	chr9:100783600-100797000	Weak transcription	Brain Substantia Nigra	brain
26	chr9:100783800-100797000	Weak transcription	NHEK	skin
27	chr9:100784000-100788800	Weak transcription	Pancreas	Pancrea
28	chr9:100784000-100789000	Weak transcription	Esophagus	oesophagus
29	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr9:100784200-100788400	Weak transcription	Ovary	ovary
31	chr9:100784200-100790600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:100784200-100792200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:100784200-100794800	Weak transcription	GM12878-XiMat	blood
34	chr9:100784200-100796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr9:100784200-100796800	Weak transcription	Gastric	stomach
36	chr9:100784200-100796800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:100784200-100796800	Weak transcription	Dnd41	blood
38	chr9:100784200-100796800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr9:100784200-100797000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:100784400-100788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:100784400-100791800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:100784400-100794200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:100784400-100794200	Weak transcription	HSMM	muscle
44	chr9:100784400-100796000	Weak transcription	Fetal Thymus	thymus
45	chr9:100784400-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:100784400-100796800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr9:100784400-100796800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:100784400-100797400	Weak transcription	HSMMtube	muscle

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