Variant report

Variant	rs73492724
Chromosome Location	chr9:100788914-100788915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100788714..100791155-chr9:100817263..100819851,2	MCF-7	breast:
2	chr9:100683121..100685809-chr9:100788659..100790764,2	K562	blood:
3	chr9:100769812..100771539-chr9:100787436..100790076,2	MCF-7	breast:
4	chr9:100767752..100769741-chr9:100788658..100791290,2	K562	blood:
5	chr9:100786498..100789736-chr9:100818544..100820292,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANP32B-1	chr9:100788662-100789077	NONHSAT133544

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12377347	0.96[AFR][1000 genomes]
rs16925952	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16925999	1.00[ASN][1000 genomes]
rs55966274	0.85[AFR][1000 genomes]
rs56160217	1.00[ASN][1000 genomes]
rs57210691	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57337895	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57559429	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57769363	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58253425	0.85[AFR][1000 genomes]
rs58506642	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60782937	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62575562	1.00[ASN][1000 genomes]
rs73490697	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73492709	1.00[ASN][1000 genomes]
rs73492711	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73492719	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73492720	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100781800-100791800	Weak transcription	Hela-S3	cervix
2	chr9:100781800-100796800	Weak transcription	Brain Anterior Caudate	brain
3	chr9:100781800-100796800	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:100782000-100796800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:100782200-100792400	Weak transcription	Aorta	Aorta
6	chr9:100782200-100794200	Weak transcription	NHDF-Ad	bronchial
7	chr9:100782200-100796800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr9:100782200-100796800	Weak transcription	HepG2	liver
9	chr9:100782400-100796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:100782400-100797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:100783000-100791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:100783600-100789200	Weak transcription	Brain Germinal Matrix	brain
13	chr9:100783600-100789400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:100783600-100796800	Weak transcription	Liver	Liver
15	chr9:100783600-100796800	Weak transcription	A549	lung
16	chr9:100783600-100797000	Weak transcription	Brain Substantia Nigra	brain
17	chr9:100783800-100797000	Weak transcription	NHEK	skin
18	chr9:100784000-100789000	Weak transcription	Esophagus	oesophagus
19	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:100784200-100790600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:100784200-100792200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:100784200-100794800	Weak transcription	GM12878-XiMat	blood
23	chr9:100784200-100796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr9:100784200-100796800	Weak transcription	Gastric	stomach
25	chr9:100784200-100796800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:100784200-100796800	Weak transcription	Dnd41	blood
27	chr9:100784200-100796800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr9:100784200-100797000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:100784400-100791800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:100784400-100794200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:100784400-100794200	Weak transcription	HSMM	muscle
32	chr9:100784400-100796000	Weak transcription	Fetal Thymus	thymus
33	chr9:100784400-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:100784400-100796800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr9:100784400-100796800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:100784400-100797400	Weak transcription	HSMMtube	muscle
39	chr9:100784600-100790400	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:100784600-100792000	Weak transcription	Fetal Stomach	stomach
41	chr9:100784600-100795600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:100784600-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:100784600-100796800	Weak transcription	Fetal Muscle Leg	muscle
44	chr9:100784800-100796800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:100785000-100797000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:100785000-100801400	Weak transcription	Fetal Intestine Small	intestine
47	chr9:100785200-100797400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:100785600-100797000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:100786000-100789200	Strong transcription	Thymus	Thymus
50	chr9:100787600-100794000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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