Variant report

Variant	rs57769363
Chromosome Location	chr9:100769040-100769041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100751400..100754135-chr9:100768209..100771208,2	MCF-7	breast:
2	chr9:100767752..100769741-chr9:100788658..100791290,2	K562	blood:
3	chr9:100763380..100766123-chr9:100768484..100771216,3	MCF-7	breast:
4	chr9:100749544..100751362-chr9:100767596..100769424,2	MCF-7	breast:
5	chr9:100683248..100685910-chr9:100768133..100772099,3	K562	blood:
6	chr9:100765048..100766771-chr9:100766811..100769374,2	MCF-7	breast:
7	chr9:100683071..100688537-chr9:100768820..100773976,7	K562	blood:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12377347	0.98[AFR][1000 genomes]
rs16925952	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16925999	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55966274	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56160217	1.00[ASN][1000 genomes]
rs57210691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57337895	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57559429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58253425	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58506642	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60782937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62575562	1.00[ASN][1000 genomes]
rs73490697	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492709	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492724	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100752000-100784000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100754600-100784200	Strong transcription	Dnd41	blood
3	chr9:100754600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:100755200-100782200	Strong transcription	HepG2	liver
5	chr9:100755200-100783800	Strong transcription	NHEK	skin
6	chr9:100755400-100783000	Weak transcription	Stomach Mucosa	stomach
7	chr9:100755600-100769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:100755600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:100755800-100782200	Strong transcription	K562	blood
10	chr9:100756000-100777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:100756400-100772600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:100756400-100783600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:100756400-100783800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr9:100756400-100784400	Strong transcription	Fetal Thymus	thymus
15	chr9:100756600-100785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:100756800-100771600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:100756800-100771800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr9:100756800-100781200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:100756800-100783000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:100756800-100783400	Strong transcription	HMEC	breast
21	chr9:100757000-100769400	Strong transcription	HUVEC	blood vessel
22	chr9:100757000-100771000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:100757000-100771600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:100757000-100771600	Strong transcription	HSMM	muscle
25	chr9:100757000-100771800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr9:100757000-100772200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr9:100757000-100772600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr9:100757000-100781000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr9:100757000-100785200	Strong transcription	Placenta	Placenta
30	chr9:100757200-100783600	Strong transcription	Liver	Liver
31	chr9:100757400-100770800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:100757400-100784000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:100757600-100772600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr9:100757600-100784400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr9:100757800-100772400	Strong transcription	Primary B cells from cord blood	blood
36	chr9:100757800-100782200	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:100758400-100780800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr9:100759600-100771000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr9:100760000-100769400	Strong transcription	A549	lung
40	chr9:100760400-100772400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:100760600-100770200	Weak transcription	Psoas Muscle	Psoas
42	chr9:100760800-100783600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:100761400-100770800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr9:100761600-100772000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:100761600-100772800	Strong transcription	Fetal Intestine Large	intestine
46	chr9:100761600-100772800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr9:100761800-100784400	Strong transcription	Thymus	Thymus
48	chr9:100762000-100770800	Strong transcription	Lung	lung
49	chr9:100762600-100785400	Strong transcription	Primary T cells from cord blood	blood
50	chr9:100763600-100771800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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