Variant report
| Variant | rs57361498 |
|---|---|
| Chromosome Location | chr20:22716298-22716299 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr20:22715961-22716301 | HepG2 | liver: | n/a | chr20:22716131-22716142 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KRT18P3 | TF binding region |
| ENSG00000265151 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs16984392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56682485 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57350835 | 1.00[EUR][1000 genomes] |
| rs58783441 | 1.00[EUR][1000 genomes] |
| rs58788950 | 1.00[EUR][1000 genomes] |
| rs59325416 | 1.00[EUR][1000 genomes] |
| rs60637933 | 1.00[EUR][1000 genomes] |
| rs73306736 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73306740 | 1.00[AMR][1000 genomes] |
| rs73902896 | 1.00[EUR][1000 genomes] |
| rs73904106 | 1.00[EUR][1000 genomes] |
| rs73904108 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1061382 | chr20:22706041-22763200 | ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1057305 | chr20:22711334-22733613 | ZNF genes & repeats Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
