Variant report

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22539124-22546431	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:22539677-22547334	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-2	chr20:22541191-22545754	ENSG00000225074
2	lnc-FOXA2-2	chr20:22541191-22543929	XLOC_013684
3	lnc-FOXA2-2	chr20:22541194-22545754	XLOC_013684
4	lnc-FOXA2-2	chr20:22540989-22545754	NONHSAT078989
5	lnc-FOXA2-2	chr20:22542193-22543929	NONHSAT078993
6	lnc-FOXA2-2	chr20:22541216-22545754	NONHSAT078994
7	lnc-FOXA2-2	chr20:22541192-22545754	NR_001558

No data

Variant related genes	Relation type
LINC00261	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1572581	1.00[EUR][1000 genomes]
rs1890206	1.00[EUR][1000 genomes]
rs1999863	1.00[EUR][1000 genomes]
rs4815119	1.00[EUR][1000 genomes]
rs57350835	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57361498	1.00[EUR][1000 genomes]
rs58783441	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59325416	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6048165	1.00[EUR][1000 genomes]
rs60637933	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902817	1.00[EUR][1000 genomes]
rs73902821	1.00[EUR][1000 genomes]
rs73902887	1.00[EUR][1000 genomes]
rs73902889	1.00[EUR][1000 genomes]
rs73902890	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902893	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902894	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902896	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73904106	1.00[EUR][1000 genomes]
rs73904108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22536200-22544800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr20:22537200-22542400	Weak transcription	K562	blood
5	chr20:22537600-22543800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr20:22539200-22542400	Weak transcription	HepG2	liver
7	chr20:22539400-22545200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:22540000-22548800	Weak transcription	Gastric	stomach
9	chr20:22541200-22545000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr20:22541400-22544200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr20:22541400-22545200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:22541600-22542400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr20:22542200-22542400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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