Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22537625..22541473-chr20:22546828..22550085,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1572581	1.00[EUR][1000 genomes]
rs1890206	1.00[EUR][1000 genomes]
rs1999863	1.00[EUR][1000 genomes]
rs4815119	1.00[EUR][1000 genomes]
rs57350835	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57361498	1.00[EUR][1000 genomes]
rs58783441	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58788950	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6048165	1.00[EUR][1000 genomes]
rs60637933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902817	1.00[EUR][1000 genomes]
rs73902821	1.00[EUR][1000 genomes]
rs73902887	1.00[EUR][1000 genomes]
rs73902889	1.00[EUR][1000 genomes]
rs73902890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902896	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73904106	1.00[EUR][1000 genomes]
rs73904108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22536200-22544800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22536800-22539400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr20:22536800-22539600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr20:22537200-22538400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
7	chr20:22537200-22542400	Weak transcription	K562	blood
8	chr20:22537600-22543800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr20:22538000-22539200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:22538000-22539200	Bivalent Enhancer	Lung	lung
11	chr20:22538200-22539200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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