Variant report

Variant	rs58783441
Chromosome Location	chr20:22551701-22551702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22423238..22424747-chr20:22550793..22553587,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1572581	1.00[EUR][1000 genomes]
rs16984392	1.00[EUR][1000 genomes]
rs1890206	1.00[EUR][1000 genomes]
rs1999863	1.00[EUR][1000 genomes]
rs4815119	1.00[EUR][1000 genomes]
rs56682485	1.00[EUR][1000 genomes]
rs57350835	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57361498	1.00[EUR][1000 genomes]
rs58788950	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59325416	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6048165	1.00[EUR][1000 genomes]
rs60637933	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902817	1.00[EUR][1000 genomes]
rs73902821	1.00[EUR][1000 genomes]
rs73902887	1.00[EUR][1000 genomes]
rs73902889	1.00[EUR][1000 genomes]
rs73902890	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902893	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902894	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902896	1.00[EUR][1000 genomes]
rs73904106	1.00[EUR][1000 genomes]
rs73904108	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22549400-22555200	Enhancers	Liver	Liver
2	chr20:22549600-22553000	Weak transcription	Gastric	stomach
3	chr20:22550400-22552800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr20:22550600-22552600	Enhancers	A549	lung
5	chr20:22550800-22555600	Genic enhancers	HepG2	liver
6	chr20:22551000-22552800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr20:22551000-22553000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr20:22551200-22552000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr20:22551400-22552000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:22551400-22552000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr20:22551400-22552000	Enhancers	K562	blood
12	chr20:22551400-22553800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
13	chr20:22551600-22551800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr20:22551600-22551800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
15	chr20:22551600-22552000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
16	chr20:22551600-22552000	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
17	chr20:22551600-22552200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr20:22551600-22552400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr20:22551600-22553200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
20	chr20:22551600-22553600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
21	chr20:22551600-22554200	Enhancers	Pancreas	Pancrea

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