Variant report

Variant	rs73902890
Chromosome Location	chr20:22533823-22533824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1572581	1.00[EUR][1000 genomes]
rs1890206	1.00[EUR][1000 genomes]
rs1999863	1.00[EUR][1000 genomes]
rs4815119	1.00[EUR][1000 genomes]
rs57350835	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58783441	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58788950	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59325416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048165	1.00[EUR][1000 genomes]
rs60637933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902817	1.00[EUR][1000 genomes]
rs73902821	1.00[EUR][1000 genomes]
rs73902887	1.00[EUR][1000 genomes]
rs73902889	1.00[EUR][1000 genomes]
rs73902893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902896	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73904106	1.00[EUR][1000 genomes]
rs73904108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22529000-22536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22530400-22536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:22533200-22534000	Bivalent Enhancer	HepG2	liver
5	chr20:22533800-22534000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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