Variant report

Variant	rs57390275
Chromosome Location	chr6:30330995-30330996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16897388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9295845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461575	1.00[AMR][1000 genomes]
rs9468697	1.00[AMR][1000 genomes]
rs9468698	1.00[AMR][1000 genomes]
rs9468699	1.00[AMR][1000 genomes]
rs9468701	1.00[AMR][1000 genomes]
rs9468757	1.00[AMR][1000 genomes]
rs9500858	1.00[AMR][1000 genomes]
rs9500861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9501318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9501319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9501320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9501428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30326400-30331200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:30329800-30331000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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