Variant report

Variant	rs9468697
Chromosome Location	chr6:30141979-30141980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16897388	1.00[AMR][1000 genomes]
rs57390275	1.00[AMR][1000 genomes]
rs9295845	1.00[AMR][1000 genomes]
rs9461570	0.87[AFR][1000 genomes]
rs9461575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468696	1.00[AFR][1000 genomes]
rs9468698	1.00[AMR][1000 genomes]
rs9468699	1.00[AMR][1000 genomes]
rs9468701	1.00[AMR][1000 genomes]
rs9500858	1.00[AMR][1000 genomes]
rs9501318	1.00[AMR][1000 genomes]
rs9501319	1.00[AMR][1000 genomes]
rs9501320	1.00[AMR][1000 genomes]
rs9501428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884057	chr6:30140540-30149251	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30139000-30152000	Weak transcription	Liver	Liver
2	chr6:30141200-30146200	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links