Variant report

Variant	rs9468698
Chromosome Location	chr6:30239670-30239671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16897388	1.00[AMR][1000 genomes]
rs57390275	1.00[AMR][1000 genomes]
rs7772365	0.97[AFR][1000 genomes]
rs9295845	1.00[AMR][1000 genomes]
rs9461575	1.00[AMR][1000 genomes]
rs9461576	0.93[AFR][1000 genomes]
rs9468697	1.00[AMR][1000 genomes]
rs9468699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468701	1.00[AMR][1000 genomes]
rs9468757	1.00[AMR][1000 genomes]
rs9500858	1.00[AMR][1000 genomes]
rs9500861	1.00[AMR][1000 genomes]
rs9501318	1.00[AMR][1000 genomes]
rs9501319	1.00[AMR][1000 genomes]
rs9501320	1.00[AMR][1000 genomes]
rs9501428	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9501430	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884061	chr6:30234627-30250450	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30228400-30239800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:30233200-30243600	Weak transcription	HSMMtube	muscle
3	chr6:30233800-30241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:30237200-30243400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:30239600-30240400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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