Variant report

Variant	rs57398440
Chromosome Location	chr3:25427587-25427588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56254711	1.00[AMR][1000 genomes]
rs58052673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58213804	1.00[AMR][1000 genomes]
rs58603378	0.84[AFR][1000 genomes]
rs60411787	1.00[AMR][1000 genomes]
rs61452285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73156076	1.00[AMR][1000 genomes]
rs73156077	1.00[AMR][1000 genomes]
rs73157821	1.00[AMR][1000 genomes]
rs73157831	1.00[AMR][1000 genomes]
rs73157833	1.00[AMR][1000 genomes]
rs73157837	1.00[AMR][1000 genomes]
rs73157843	1.00[AMR][1000 genomes]
rs73157850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820431	1.00[AMR][1000 genomes]
rs73820469	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25426600-25427800	Enhancers	Brain Anterior Caudate	brain
2	chr3:25426800-25427800	Enhancers	Fetal Intestine Large	intestine
3	chr3:25427000-25427600	Enhancers	Fetal Stomach	stomach
4	chr3:25427000-25428000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:25427000-25428400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:25427400-25427800	Enhancers	Right Atrium	heart
7	chr3:25427400-25428400	Enhancers	Fetal Kidney	kidney
8	chr3:25427400-25429200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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