Variant report

Variant	rs73145460
Chromosome Location	chr3:25452486-25452487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56254711	1.00[AMR][1000 genomes]
rs57398440	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58052673	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58213804	1.00[AMR][1000 genomes]
rs60411787	1.00[AMR][1000 genomes]
rs61452285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73156076	1.00[AMR][1000 genomes]
rs73156077	1.00[AMR][1000 genomes]
rs73157821	1.00[AMR][1000 genomes]
rs73157831	1.00[AMR][1000 genomes]
rs73157833	1.00[AMR][1000 genomes]
rs73157837	1.00[AMR][1000 genomes]
rs73157843	1.00[AMR][1000 genomes]
rs73157850	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157853	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820431	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv524030	chr3:25450943-25453181	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25451400-25454400	Enhancers	Fetal Intestine Large	intestine
2	chr3:25451600-25453400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:25451600-25454200	Enhancers	Stomach Mucosa	stomach
4	chr3:25451600-25454400	Enhancers	Fetal Intestine Small	intestine
5	chr3:25451800-25453000	Weak transcription	Fetal Kidney	kidney
6	chr3:25451800-25453600	Enhancers	A549	lung
7	chr3:25451800-25454000	Enhancers	HepG2	liver
8	chr3:25452200-25453400	Enhancers	Placenta	Placenta
9	chr3:25452200-25453600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:25452200-25453600	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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