Variant report

Variant	rs58213804
Chromosome Location	chr3:25417424-25417425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56167545	1.00[AFR][1000 genomes]
rs56254711	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56397774	1.00[AFR][1000 genomes]
rs57398440	1.00[AMR][1000 genomes]
rs58052673	1.00[AMR][1000 genomes]
rs59064731	1.00[AFR][1000 genomes]
rs60112210	1.00[AFR][1000 genomes]
rs60411787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60519915	0.81[AFR][1000 genomes]
rs61165804	0.81[AFR][1000 genomes]
rs61452285	1.00[AMR][1000 genomes]
rs61558701	1.00[AFR][1000 genomes]
rs73141615	1.00[AMR][1000 genomes]
rs73141619	1.00[AMR][1000 genomes]
rs73145460	1.00[AMR][1000 genomes]
rs73156076	1.00[AMR][1000 genomes]
rs73156077	1.00[AMR][1000 genomes]
rs73157807	1.00[AFR][1000 genomes]
rs73157810	1.00[AFR][1000 genomes]
rs73157821	1.00[AMR][1000 genomes]
rs73157831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157833	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157843	1.00[AMR][1000 genomes]
rs73157850	1.00[AMR][1000 genomes]
rs73157853	1.00[AMR][1000 genomes]
rs73820431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820454	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25416000-25420200	Enhancers	Fetal Intestine Large	intestine
2	chr3:25416800-25417600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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