Variant report
| Variant | rs73820431 |
|---|---|
| Chromosome Location | chr3:25409450-25409451 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:25402908..25405265-chr3:25407637..25410309,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs56167545 | 1.00[AFR][1000 genomes] |
| rs56254711 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56397774 | 1.00[AFR][1000 genomes] |
| rs57398440 | 1.00[AMR][1000 genomes] |
| rs58052673 | 1.00[AMR][1000 genomes] |
| rs58213804 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59064731 | 1.00[AFR][1000 genomes] |
| rs60112210 | 1.00[AFR][1000 genomes] |
| rs60411787 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60519915 | 0.81[AFR][1000 genomes] |
| rs61165804 | 0.81[AFR][1000 genomes] |
| rs61452285 | 1.00[AMR][1000 genomes] |
| rs61558701 | 1.00[AFR][1000 genomes] |
| rs73141615 | 1.00[AMR][1000 genomes] |
| rs73141619 | 1.00[AMR][1000 genomes] |
| rs73145460 | 1.00[AMR][1000 genomes] |
| rs73156076 | 1.00[AMR][1000 genomes] |
| rs73156077 | 1.00[AMR][1000 genomes] |
| rs73157807 | 1.00[AFR][1000 genomes] |
| rs73157810 | 1.00[AFR][1000 genomes] |
| rs73157821 | 1.00[AMR][1000 genomes] |
| rs73157831 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73157833 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73157837 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73157843 | 1.00[AMR][1000 genomes] |
| rs73157850 | 1.00[AMR][1000 genomes] |
| rs73157853 | 1.00[AMR][1000 genomes] |
| rs73820454 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949035 | chr3:25194301-26084890 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 68 gene(s) | inside rSNPs | diseases |
| 2 | nsv834645 | chr3:25363723-25555107 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:25407600-25410200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr3:25408600-25412000 | Weak transcription | Fetal Intestine Large | intestine |
