Variant report

Variant	rs57403347
Chromosome Location	chr8:95176969-95176970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr8:95176932-95177846	SK-N-SH	brain:	n/a	n/a
2	ESR1	chr8:95176935-95177235	T-47D	breast:	n/a	n/a
3	ESR1	chr8:95176966-95177256	T-47D	breast:	n/a	n/a
4	ESR1	chr8:95176801-95177273	T-47D	breast:	n/a	n/a
5	ESR1	chr8:95176836-95177300	T-47D	breast:	n/a	n/a
6	ESR1	chr8:95176832-95177290	T-47D	breast:	n/a	n/a
7	EP300	chr8:95176505-95179658	SK-N-SH	brain:	n/a	chr8:95176919-95176926
8	ESR1	chr8:95176937-95177266	T-47D	breast:	n/a	n/a
9	TCF12	chr8:95176962-95177898	SK-N-SH	brain:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:95104493..95105461-chr8:95176619..95177572,7	MCF-7	breast:
2	chr8:95168210..95169167-chr8:95176600..95177533,4	MCF-7	breast:
3	chr8:95049624..95050182-chr8:95176702..95177549,2	MCF-7	breast:
4	chr8:95167990..95168562-chr8:95176616..95177386,3	MCF-7	breast:
5	chr8:95104546..95105396-chr8:95176688..95177520,5	MCF-7	breast:
6	chr8:95104410..95105461-chr8:95176556..95177572,12	MCF-7	breast:
7	chr8:95176962..95177482-chr8:95225796..95226601,2	MCF-7	breast:
8	chr8:95049335..95050182-chr8:95176702..95177549,3	MCF-7	breast:
9	chr8:95167854..95169167-chr8:95176635..95177448,6	MCF-7	breast:

No data

Variant related genes	Relation type
CDH17	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11776675	0.89[EUR][1000 genomes]
rs11786144	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2340029	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2340030	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2879672	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3214050	0.81[ASN][1000 genomes]
rs55750907	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56655874	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471435	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72670354	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7842215	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95156400-95177400	Strong transcription	Rectal Mucosa Donor 31	rectum
3	chr8:95163600-95177000	Strong transcription	Duodenum Mucosa	Duodenum
4	chr8:95164200-95183400	Weak transcription	Aorta	Aorta
5	chr8:95169000-95177600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:95169400-95177200	Weak transcription	Stomach Mucosa	stomach
7	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr8:95171400-95177200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
10	chr8:95175000-95177400	Weak transcription	Gastric	stomach
11	chr8:95175400-95177400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:95175400-95178200	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:95175800-95177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:95175800-95177600	Weak transcription	Pancreas	Pancrea
15	chr8:95176000-95177000	Weak transcription	A549	lung
16	chr8:95176200-95178800	Enhancers	Fetal Stomach	stomach
17	chr8:95176200-95179000	Weak transcription	HMEC	breast
18	chr8:95176400-95178000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:95176400-95178400	Enhancers	Fetal Heart	heart
20	chr8:95176400-95178600	Enhancers	NHDF-Ad	bronchial
21	chr8:95176400-95178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:95176600-95177200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr8:95176600-95177400	Enhancers	Fetal Kidney	kidney
24	chr8:95176600-95178600	Genic enhancers	Fetal Intestine Small	intestine
25	chr8:95176800-95177400	Enhancers	Adipose Nuclei	Adipose
26	chr8:95176800-95177600	Enhancers	Fetal Lung	lung
27	chr8:95176800-95177800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:95176800-95177800	Genic enhancers	Fetal Intestine Large	intestine
29	chr8:95176800-95177800	Enhancers	Fetal Muscle Leg	muscle
30	chr8:95176800-95177800	Enhancers	NHLF	lung
31	chr8:95176800-95178000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:95176800-95178200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:95176800-95178400	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links