Variant report

Variant	rs2879672
Chromosome Location	chr8:95176677-95176678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:95176226-95176709	MCF10A-Er-Src	breast:	n/a	chr8:95176462-95176473
2	EP300	chr8:95176505-95179658	SK-N-SH	brain:	n/a	chr8:95176919-95176926
3	STAT3	chr8:95176227-95176719	MCF10A-Er-Src	breast:	n/a	chr8:95176462-95176473

No.	Distal block	Cell Line	Cell type
1	chr8:95104493..95105461-chr8:95176619..95177572,7	MCF-7	breast:
2	chr8:95168210..95169167-chr8:95176600..95177533,4	MCF-7	breast:
3	chr8:95167990..95168562-chr8:95176616..95177386,3	MCF-7	breast:
4	chr8:95104410..95105461-chr8:95176556..95177572,12	MCF-7	breast:
5	chr8:95167854..95169167-chr8:95176635..95177448,6	MCF-7	breast:

Variant related genes	Relation type
CDH17	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10956903	0.92[ASN][1000 genomes]
rs11776675	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs11786144	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1600765	0.95[JPT][hapmap]
rs2514809	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2514810	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2514812	0.95[JPT][hapmap]
rs2514813	0.95[JPT][hapmap]
rs2514819	0.95[JPT][hapmap]
rs2613234	0.95[JPT][hapmap]
rs2613235	0.91[JPT][hapmap]
rs56655874	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57403347	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833351	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7842215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95154000-95176800	Strong transcription	Fetal Intestine Large	intestine
3	chr8:95156400-95177400	Strong transcription	Rectal Mucosa Donor 31	rectum
4	chr8:95163600-95177000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr8:95164200-95183400	Weak transcription	Aorta	Aorta
6	chr8:95169000-95176800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:95169000-95177600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:95169400-95177200	Weak transcription	Stomach Mucosa	stomach
9	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr8:95171400-95177200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
12	chr8:95175000-95177400	Weak transcription	Gastric	stomach
13	chr8:95175400-95177400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:95175400-95178200	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:95175800-95177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:95175800-95177600	Weak transcription	Pancreas	Pancrea
17	chr8:95176000-95177000	Weak transcription	A549	lung
18	chr8:95176200-95178800	Enhancers	Fetal Stomach	stomach
19	chr8:95176200-95179000	Weak transcription	HMEC	breast
20	chr8:95176400-95178000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:95176400-95178400	Enhancers	Fetal Heart	heart
22	chr8:95176400-95178600	Enhancers	NHDF-Ad	bronchial
23	chr8:95176400-95178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:95176600-95177200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:95176600-95177400	Enhancers	Fetal Kidney	kidney
26	chr8:95176600-95178600	Genic enhancers	Fetal Intestine Small	intestine

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