Variant report

Variant	rs2514810
Chromosome Location	chr8:95183717-95183718
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95170830..95174047-chr8:95182849..95185604,3	MCF-7	breast:
2	chr8:95168326..95171086-chr8:95181952..95185312,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10956903	0.83[ASN][1000 genomes]
rs12545326	0.90[ASN][1000 genomes]
rs1600765	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2157	0.87[CEU][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs2243518	0.81[CEU][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs2340029	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs2340030	0.83[ASN][1000 genomes]
rs2446865	0.91[ASN][1000 genomes]
rs2514809	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs2514812	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2514813	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514816	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2514819	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2613234	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2613235	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2623153	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2623170	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2879672	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs28840369	0.91[ASN][1000 genomes]
rs56655874	0.85[ASN][1000 genomes]
rs6471435	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs72670354	0.82[ASN][1000 genomes]
rs7833351	0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs7842215	0.83[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs957013	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2514810	GEM	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
4	chr8:95177800-95188400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:95177800-95190000	Strong transcription	Fetal Intestine Large	intestine
6	chr8:95179200-95190000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr8:95180000-95183800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:95180800-95183800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:95182000-95185000	Weak transcription	Fetal Intestine Small	intestine
10	chr8:95182000-95185200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:95182600-95183800	Enhancers	Primary hematopoietic stem cells	blood
12	chr8:95182600-95184200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:95183000-95183800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:95183000-95183800	Enhancers	GM12878-XiMat	blood
15	chr8:95183000-95184000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr8:95183200-95184000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:95183200-95184400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:95183400-95184000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:95183400-95184400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:95183600-95183800	Weak transcription	Aorta	Aorta
21	chr8:95183600-95184000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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