Variant report

Variant	rs2514813
Chromosome Location	chr8:95186295-95186296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12545326	0.99[ASN][1000 genomes]
rs1585972	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs1600765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157	0.87[CEU][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2243518	0.81[CEU][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs2446865	0.98[ASN][1000 genomes]
rs2514809	0.90[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs2514810	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514812	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2514816	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514819	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2613234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2613235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2623153	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2623170	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2879672	0.95[JPT][hapmap]
rs28840369	0.96[ASN][1000 genomes]
rs3214050	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs6471435	0.95[JPT][hapmap]
rs72670357	0.81[ASN][1000 genomes]
rs7833351	0.95[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[ASN][1000 genomes]
rs7842215	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs957013	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2514813	GEM	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr8:95177800-95188400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:95177800-95190000	Strong transcription	Fetal Intestine Large	intestine
5	chr8:95179200-95190000	Strong transcription	Duodenum Mucosa	Duodenum
6	chr8:95184400-95190000	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr8:95185000-95186800	Strong transcription	Fetal Intestine Small	intestine
8	chr8:95185200-95186400	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:95185800-95188000	Weak transcription	Colonic Mucosa	Colon

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