Variant report

Variant	rs2514809
Chromosome Location	chr8:95181246-95181247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95179472..95182250-chr8:95190342..95192511,2	MCF-7	breast:
2	chr8:95173595..95177551-chr8:95177844..95181595,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079112	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10956903	0.83[ASN][1000 genomes]
rs12545326	0.84[ASN][1000 genomes]
rs1600765	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2157	0.83[MEX][hapmap]
rs2340029	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs2340030	0.82[ASN][1000 genomes]
rs2446865	0.83[ASN][1000 genomes]
rs2514810	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs2514812	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs2514813	0.90[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs2514816	0.84[ASN][1000 genomes]
rs2514819	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2613234	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs2613235	0.89[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.83[ASN][1000 genomes]
rs2623153	0.80[ASN][1000 genomes]
rs2623170	0.82[ASN][1000 genomes]
rs2879672	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs28840369	0.83[ASN][1000 genomes]
rs55750907	0.86[ASN][1000 genomes]
rs56655874	0.91[ASN][1000 genomes]
rs6471435	0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs72670354	0.84[ASN][1000 genomes]
rs7833351	0.95[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7842215	0.85[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs957013	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2514809	GEM	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95164200-95183400	Weak transcription	Aorta	Aorta
3	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
5	chr8:95177400-95181800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:95177800-95181400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:95177800-95183000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:95177800-95183200	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr8:95177800-95183600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:95177800-95188400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:95177800-95190000	Strong transcription	Fetal Intestine Large	intestine
12	chr8:95178600-95182000	Strong transcription	Fetal Intestine Small	intestine
13	chr8:95179200-95181600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:95179200-95190000	Strong transcription	Duodenum Mucosa	Duodenum
15	chr8:95179400-95182000	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:95179800-95183200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:95180000-95183000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:95180000-95183400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:95180000-95183800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:95180200-95181400	Weak transcription	GM12878-XiMat	blood
21	chr8:95180800-95181400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:95180800-95182200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:95180800-95183800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:95181000-95181400	Enhancers	Adipose Nuclei	Adipose
25	chr8:95181000-95182000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr8:95181000-95182000	Enhancers	Brain Substantia Nigra	brain
27	chr8:95181000-95183600	Enhancers	Stomach Smooth Muscle	stomach
28	chr8:95181200-95181400	Enhancers	HMEC	breast
29	chr8:95181200-95181600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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