Variant report

Variant	rs10956903
Chromosome Location	chr8:95176105-95176106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:95176042-95176182	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr8:95176101-95176147	HepG2	liver:	n/a	n/a
3	CTCF	chr8:95176080-95176230	Caco-2	colon:	n/a	n/a
4	CTCF	chr8:95176000-95176150	GM12866	blood:	n/a	n/a
5	CTCF	chr8:95176040-95176190	Caco-2	colon:	n/a	n/a
6	CTCF	chr8:95175980-95176130	HCT-116	colon:	n/a	n/a
7	CTCF	chr8:95176040-95176190	SK-N-SH_RA	brain:	n/a	n/a
8	CTCF	chr8:95176060-95176210	NB4	blood:	n/a	n/a
9	CTCF	chr8:95176000-95176150	A549	lung:	n/a	n/a
10	CTCF	chr8:95176040-95176190	HRPEpiC	eye:	n/a	n/a
11	CTCF	chr8:95176020-95176170	HCT-116	colon:	n/a	n/a
12	RAD21	chr8:95175894-95176231	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr8:95176092-95176143	GM12891	blood:	n/a	n/a
14	CTCF	chr8:95176040-95176190	WERI-Rb-1	eye:	n/a	n/a
15	CTCF	chr8:95176000-95176150	HEK293	kidney:	n/a	n/a
16	CTCF	chr8:95176020-95176170	GM12873	blood:	n/a	n/a
17	CTCF	chr8:95176060-95176210	HRPEpiC	eye:	n/a	n/a

Variant related genes	Relation type
CDH17	TF binding region

rs_ID	r²[population]
rs11786144	0.82[ASN][1000 genomes]
rs2514809	0.83[ASN][1000 genomes]
rs2514810	0.83[ASN][1000 genomes]
rs2879672	0.92[ASN][1000 genomes]
rs56655874	0.92[ASN][1000 genomes]
rs6471435	0.92[ASN][1000 genomes]
rs7833351	0.81[ASN][1000 genomes]
rs7842215	0.93[ASN][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95154000-95176800	Strong transcription	Fetal Intestine Large	intestine
3	chr8:95156400-95177400	Strong transcription	Rectal Mucosa Donor 31	rectum
4	chr8:95163600-95177000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr8:95164200-95183400	Weak transcription	Aorta	Aorta
6	chr8:95169000-95176800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:95169000-95177600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:95169400-95177200	Weak transcription	Stomach Mucosa	stomach
9	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr8:95171400-95177200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
12	chr8:95174400-95176400	Strong transcription	Fetal Intestine Small	intestine
13	chr8:95175000-95176600	Strong transcription	Rectal Smooth Muscle	rectum
14	chr8:95175000-95177400	Weak transcription	Gastric	stomach
15	chr8:95175400-95177400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:95175400-95178200	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:95175800-95176200	Weak transcription	Fetal Stomach	stomach
18	chr8:95175800-95177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:95175800-95177600	Weak transcription	Pancreas	Pancrea
20	chr8:95176000-95176200	Enhancers	HMEC	breast
21	chr8:95176000-95176400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:95176000-95177000	Weak transcription	A549	lung

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