Variant report

Variant	rs7842215
Chromosome Location	chr8:95176404-95176405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:95176226-95176709	MCF10A-Er-Src	breast:	n/a	chr8:95176462-95176473
2	FOS	chr8:95176309-95176671	MCF10A-Er-Src	breast:	n/a	n/a
3	E2F4	chr8:95176316-95176516	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr8:95176313-95176658	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr8:95176227-95176719	MCF10A-Er-Src	breast:	n/a	chr8:95176462-95176473
6	STAT3	chr8:95176304-95176631	MCF10A-Er-Src	breast:	n/a	chr8:95176462-95176473
7	FOS	chr8:95176306-95176640	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr8:95176389-95176489	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CDH17	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10956903	0.93[ASN][1000 genomes]
rs11776675	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs11786144	0.91[CEU][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1600765	0.95[JPT][hapmap]
rs2340029	0.84[GIH][hapmap]
rs2514809	0.85[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2514810	0.83[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2514812	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2514813	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs2514819	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2613234	0.95[JPT][hapmap]
rs2613235	0.91[JPT][hapmap]
rs2879672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3214050	0.84[GIH][hapmap]
rs56655874	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57403347	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7833351	0.86[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95154000-95176800	Strong transcription	Fetal Intestine Large	intestine
3	chr8:95156400-95177400	Strong transcription	Rectal Mucosa Donor 31	rectum
4	chr8:95163600-95177000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr8:95164200-95183400	Weak transcription	Aorta	Aorta
6	chr8:95169000-95176800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:95169000-95177600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:95169400-95177200	Weak transcription	Stomach Mucosa	stomach
9	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr8:95171400-95177200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
12	chr8:95175000-95176600	Strong transcription	Rectal Smooth Muscle	rectum
13	chr8:95175000-95177400	Weak transcription	Gastric	stomach
14	chr8:95175400-95177400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:95175400-95178200	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:95175800-95177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:95175800-95177600	Weak transcription	Pancreas	Pancrea
18	chr8:95176000-95177000	Weak transcription	A549	lung
19	chr8:95176200-95178800	Enhancers	Fetal Stomach	stomach
20	chr8:95176200-95179000	Weak transcription	HMEC	breast
21	chr8:95176400-95176600	Weak transcription	Fetal Intestine Small	intestine
22	chr8:95176400-95178000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:95176400-95178400	Enhancers	Fetal Heart	heart
24	chr8:95176400-95178600	Enhancers	NHDF-Ad	bronchial
25	chr8:95176400-95178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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