Variant report

Variant	rs3214050
Chromosome Location	chr8:95186382-95186383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11786144	0.84[GIH][hapmap];0.95[JPT][hapmap]
rs12545326	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1585972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600765	0.84[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2340029	0.82[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2340030	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2446865	0.81[ASN][1000 genomes]
rs2514813	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs2514816	0.82[ASN][1000 genomes]
rs2613217	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2613234	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs2613235	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs28840369	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55750907	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57403347	0.81[ASN][1000 genomes]
rs72670354	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72670357	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842215	0.84[GIH][hapmap]
rs957013	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3214050	LAPTM4B	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr8:95177800-95188400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:95177800-95190000	Strong transcription	Fetal Intestine Large	intestine
5	chr8:95179200-95190000	Strong transcription	Duodenum Mucosa	Duodenum
6	chr8:95184400-95190000	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr8:95185000-95186800	Strong transcription	Fetal Intestine Small	intestine
8	chr8:95185200-95186400	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:95185800-95188000	Weak transcription	Colonic Mucosa	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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