Variant report

Variant	rs7833351
Chromosome Location	chr8:95182178-95182179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95179472..95182250-chr8:95190342..95192511,2	MCF-7	breast:
2	chr8:95181437..95183595-chr8:95195671..95197695,2	MCF-7	breast:
3	chr8:95168326..95171086-chr8:95181952..95185312,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10956903	0.81[ASN][1000 genomes]
rs12545326	0.86[ASN][1000 genomes]
rs1600765	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2157	0.83[MEX][hapmap]
rs2340029	0.80[CHD][hapmap];0.85[ASN][1000 genomes]
rs2340030	0.85[ASN][1000 genomes]
rs2446865	0.86[ASN][1000 genomes]
rs2514809	0.95[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2514810	0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs2514812	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2514813	0.95[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[ASN][1000 genomes]
rs2514816	0.86[ASN][1000 genomes]
rs2514819	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2613234	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2613235	0.94[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes]
rs2623153	0.83[ASN][1000 genomes]
rs2623170	0.85[ASN][1000 genomes]
rs2879672	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs28840369	0.86[ASN][1000 genomes]
rs55750907	0.84[ASN][1000 genomes]
rs56655874	0.88[ASN][1000 genomes]
rs6471435	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs72670354	0.86[ASN][1000 genomes]
rs7842215	0.86[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs957013	0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7833351	GEM	cis	parietal	SCAN
rs7833351	DPY19L4	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95164200-95183400	Weak transcription	Aorta	Aorta
3	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
5	chr8:95177800-95183000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:95177800-95183200	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr8:95177800-95183600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:95177800-95188400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:95177800-95190000	Strong transcription	Fetal Intestine Large	intestine
10	chr8:95179200-95190000	Strong transcription	Duodenum Mucosa	Duodenum
11	chr8:95179800-95183200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:95180000-95183000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:95180000-95183400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:95180000-95183800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:95180800-95182200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:95180800-95183800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:95181000-95183600	Enhancers	Stomach Smooth Muscle	stomach
18	chr8:95181400-95183000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:95181800-95182600	Enhancers	Brain Anterior Caudate	brain
20	chr8:95181800-95183000	Weak transcription	GM12878-XiMat	blood
21	chr8:95182000-95185000	Weak transcription	Fetal Intestine Small	intestine
22	chr8:95182000-95185200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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