Variant report

Variant	rs2243518
Chromosome Location	chr8:95188850-95188851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1600765	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs2157	0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs2514810	0.81[CEU][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs2514812	0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs2514813	0.81[CEU][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs2514816	0.92[EUR][1000 genomes]
rs2514819	0.81[CEU][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs2613234	0.81[CEU][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs2613235	0.81[CEU][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs2623153	0.92[EUR][1000 genomes]
rs2623170	0.90[EUR][1000 genomes]
rs957013	0.81[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2243518	GEM	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
2	chr8:95177800-95190000	Strong transcription	Fetal Intestine Large	intestine
3	chr8:95179200-95190000	Strong transcription	Duodenum Mucosa	Duodenum
4	chr8:95184400-95190000	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr8:95187600-95189600	Strong transcription	Fetal Intestine Small	intestine
6	chr8:95188000-95189600	Strong transcription	Colonic Mucosa	Colon
7	chr8:95188200-95189800	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:95188400-95189800	Strong transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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