Variant report

Variant	rs57435476
Chromosome Location	chr6:143854548-143854549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143853197-143857318	K562	blood:	n/a	n/a

Variant related genes	Relation type
PHACTR2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12524004	1.00[ASN][1000 genomes]
rs58194363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61258994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71564438	1.00[ASN][1000 genomes]
rs73582360	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73582365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772255	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484729	1.00[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143834600-143855800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:143850400-143855400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:143850400-143857200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:143850400-143857400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:143850600-143855600	Weak transcription	GM12878-XiMat	blood
6	chr6:143850600-143855800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:143850600-143857200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:143850600-143857200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:143851600-143857000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:143852600-143856400	Enhancers	Fetal Intestine Large	intestine
14	chr6:143852800-143854600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:143852800-143857400	Weak transcription	Esophagus	oesophagus
16	chr6:143853000-143856800	Enhancers	Stomach Mucosa	stomach
17	chr6:143853400-143857200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:143853400-143857400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:143853600-143856600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:143853600-143856800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:143853600-143857000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:143853600-143857400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:143853800-143854600	Bivalent Enhancer	HepG2	liver
24	chr6:143853800-143857200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:143854000-143855000	Weak transcription	Fetal Intestine Small	intestine
26	chr6:143854000-143857600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:143854200-143854600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:143854400-143854800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:143854400-143855200	Enhancers	Monocytes-CD14+_RO01746	blood

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