Variant report

Variant	rs73582360
Chromosome Location	chr6:143853043-143853044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr6:143852803-143853174	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:143840204..143842823-chr6:143850815..143853475,2	MCF-7	breast:
2	chr6:143846773..143853346-chr6:143854519..143860326,12	MCF-7	breast:
3	chr6:143831074..143833862-chr6:143851560..143853874,2	K562	blood:

Variant related genes	Relation type
PHACTR2	TF binding region
ENSG00000001036	Chromatin interaction
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12524004	1.00[ASN][1000 genomes]
rs57435476	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58194363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61258994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71564438	1.00[ASN][1000 genomes]
rs73582365	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760938	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772255	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484729	1.00[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143834600-143855800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:143850000-143854400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:143850000-143854400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143850400-143853200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:143850400-143855400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:143850400-143857200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:143850400-143857400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:143850600-143853200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:143850600-143855600	Weak transcription	GM12878-XiMat	blood
10	chr6:143850600-143855800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:143850600-143857200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:143850600-143857200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:143850600-143857200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:143851600-143857000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:143852600-143853400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:143852600-143853400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr6:143852600-143853600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:143852600-143854000	Enhancers	Fetal Intestine Small	intestine
21	chr6:143852600-143856400	Enhancers	Fetal Intestine Large	intestine
22	chr6:143852800-143853200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:143852800-143853600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:143852800-143853600	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:143852800-143853800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:143852800-143854600	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:143852800-143857400	Weak transcription	Esophagus	oesophagus
28	chr6:143853000-143853200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:143853000-143853200	Enhancers	Fetal Thymus	thymus
30	chr6:143853000-143853400	Enhancers	Primary T cells from cord blood	blood
31	chr6:143853000-143856800	Enhancers	Stomach Mucosa	stomach

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