Variant report

Variant	rs7772255
Chromosome Location	chr6:143849946-143849947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143849112..143852021-chr6:143856651..143858960,2	K562	blood:
2	chr6:143848117..143850404-chr6:144163053..144166032,2	MCF-7	breast:
3	chr6:143848305..143850454-chr6:144386141..144388297,2	MCF-7	breast:
4	chr6:143848841..143851763-chr6:143856827..143860032,4	MCF-7	breast:
5	chr6:143831267..143833119-chr6:143848194..143850202,2	K562	blood:
6	chr6:143846773..143853346-chr6:143854519..143860326,12	MCF-7	breast:
7	chr6:143836970..143840867-chr6:143848057..143852037,4	MCF-7	breast:
8	chr6:143845389..143848247-chr6:143848720..143850430,2	K562	blood:
9	chr6:143833776..143837281-chr6:143848797..143850662,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction
ENSG00000135521	Chromatin interaction
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12524004	1.00[ASN][1000 genomes]
rs57435476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58194363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61258994	1.00[AMR][1000 genomes]
rs71564438	1.00[ASN][1000 genomes]
rs73582360	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73582365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7760781	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7760938	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143834600-143855800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:143835000-143850000	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143848800-143850000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:143849000-143850600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:143849200-143850000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:143849200-143850200	Enhancers	Primary B cells from cord blood	blood
7	chr6:143849200-143850400	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:143849200-143850400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr6:143849200-143850400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:143849200-143850600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:143849200-143850600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:143849200-143850600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:143849200-143850600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:143849400-143850000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:143849400-143850400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:143849400-143850400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:143849400-143850400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:143849400-143850400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:143849400-143850400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:143849400-143850400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr6:143849400-143850400	Enhancers	Dnd41	blood
22	chr6:143849400-143850600	Enhancers	Primary hematopoietic stem cells	blood
23	chr6:143849400-143850600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr6:143849400-143850600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr6:143849600-143850000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:143849600-143850000	Flanking Active TSS	GM12878-XiMat	blood
27	chr6:143849600-143850400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:143849600-143850600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:143849600-143850600	Enhancers	Primary T cells from cord blood	blood
30	chr6:143849600-143850600	Enhancers	Fetal Intestine Small	intestine
31	chr6:143849600-143851400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:143849800-143850000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:143849800-143850000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr6:143849800-143850000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:143849800-143850400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr6:143849800-143850400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:143849800-143850600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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