Variant report

Variant	rs71564438
Chromosome Location	chr6:143876563-143876564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143856385..143859400-chr6:143873221..143878065,7	MCF-7	breast:
2	chr6:143825880..143828430-chr6:143875843..143877779,2	K562	blood:
3	chr6:143866196..143871091-chr6:143873413..143876633,4	K562	blood:

Variant related genes	Relation type
ENSG00000229036	Chromatin interaction
ENSG00000112419	Chromatin interaction

rs_ID	r²[population]
rs12524004	1.00[ASN][1000 genomes]
rs57435476	1.00[ASN][1000 genomes]
rs58194363	1.00[ASN][1000 genomes]
rs73582360	1.00[ASN][1000 genomes]
rs73582365	1.00[ASN][1000 genomes]
rs7760781	1.00[ASN][1000 genomes]
rs7760938	1.00[ASN][1000 genomes]
rs7772255	1.00[ASN][1000 genomes]
rs9390114	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143865400-143877800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:143868200-143883600	Weak transcription	Gastric	stomach
4	chr6:143870400-143877000	Enhancers	Fetal Intestine Small	intestine
5	chr6:143871000-143879000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:143874200-143877600	Enhancers	Fetal Intestine Large	intestine
7	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:143875400-143877600	Enhancers	Fetal Thymus	thymus
9	chr6:143875400-143878200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:143875600-143876600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:143875600-143876800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr6:143875600-143876800	Enhancers	Thymus	Thymus
13	chr6:143875600-143876800	Enhancers	HUVEC	blood vessel
14	chr6:143875600-143877000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:143875600-143877000	Enhancers	Small Intestine	intestine
16	chr6:143875600-143877000	Enhancers	Stomach Mucosa	stomach
17	chr6:143875600-143877000	Enhancers	HepG2	liver
18	chr6:143875800-143876600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:143875800-143876600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr6:143875800-143876600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:143875800-143876600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:143875800-143876600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:143875800-143876800	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr6:143875800-143876800	Enhancers	NHEK	skin
25	chr6:143875800-143877000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:143875800-143877000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:143875800-143877000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:143875800-143877600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:143875800-143882600	Weak transcription	Left Ventricle	heart
30	chr6:143876000-143876600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr6:143876000-143876600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr6:143876000-143876600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr6:143876000-143876600	Enhancers	GM12878-XiMat	blood
34	chr6:143876000-143876600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr6:143876000-143876800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:143876000-143876800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:143876000-143876800	Enhancers	Fetal Heart	heart
38	chr6:143876000-143876800	Flanking Active TSS	K562	blood
39	chr6:143876000-143878400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr6:143876000-143879200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:143876200-143876600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:143876200-143876600	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr6:143876200-143876600	Flanking Active TSS	NH-A	brain
44	chr6:143876200-143876600	Flanking Active TSS	Osteobl	bone
45	chr6:143876200-143877000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:143876200-143877800	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr6:143876200-143878200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:143876200-143878600	Enhancers	HSMM	muscle
49	chr6:143876200-143884800	Weak transcription	Fetal Stomach	stomach
50	chr6:143876400-143876600	Enhancers	HUES48 Cell Line	embryonic stem cell

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