Variant report

Variant	rs5745549
Chromosome Location	chr1:76378502-76378503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1146591	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1146631	1.00[JPT][hapmap]
rs1251534	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12726486	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12727287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12731410	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12731627	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12732407	1.00[ASN][1000 genomes]
rs12732472	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733990	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12739244	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12740253	1.00[ASN][1000 genomes]
rs12743235	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12749266	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759535	1.00[ASN][1000 genomes]
rs12759945	1.00[ASN][1000 genomes]
rs1612901	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17848065	1.00[ASN][1000 genomes]
rs34218840	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34270172	1.00[ASN][1000 genomes]
rs34748623	1.00[ASN][1000 genomes]
rs34812705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892795	1.00[ASN][1000 genomes]
rs34898565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34977392	1.00[ASN][1000 genomes]
rs35283569	1.00[ASN][1000 genomes]
rs35321712	1.00[ASN][1000 genomes]
rs35416402	1.00[ASN][1000 genomes]
rs35424470	1.00[ASN][1000 genomes]
rs35505941	1.00[ASN][1000 genomes]
rs35614774	1.00[ASN][1000 genomes]
rs35857029	1.00[ASN][1000 genomes]
rs35937370	1.00[ASN][1000 genomes]
rs35961154	1.00[ASN][1000 genomes]
rs35970385	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4335328	1.00[ASN][1000 genomes]
rs4472716	1.00[ASN][1000 genomes]
rs55764969	1.00[ASN][1000 genomes]
rs55970724	1.00[ASN][1000 genomes]
rs56403434	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57218288	1.00[ASN][1000 genomes]
rs57389460	1.00[ASN][1000 genomes]
rs5745317	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];1.00[ASN][1000 genomes]
rs5745328	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs5745332	1.00[ASN][1000 genomes]
rs5745352	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5745355	1.00[ASN][1000 genomes]
rs5745362	1.00[ASN][1000 genomes]
rs5745368	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5745369	1.00[ASN][1000 genomes]
rs5745376	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5745380	1.00[ASN][1000 genomes]
rs5745391	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[ASN][1000 genomes]
rs5745403	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs5745425	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs5745428	1.00[ASN][1000 genomes]
rs5745434	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5745438	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5745503	1.00[CEU][hapmap]
rs5745537	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs58068229	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71502707	1.00[ASN][1000 genomes]
rs71656849	1.00[ASN][1000 genomes]
rs71656851	1.00[ASN][1000 genomes]
rs71656852	1.00[ASN][1000 genomes]
rs71656854	1.00[ASN][1000 genomes]
rs71656855	1.00[ASN][1000 genomes]
rs71656857	1.00[ASN][1000 genomes]
rs71656858	1.00[ASN][1000 genomes]
rs71656866	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71656867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71656870	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74089618	1.00[ASN][1000 genomes]
rs74089619	1.00[ASN][1000 genomes]
rs74089674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv871671	chr1:76304215-76391646	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1850335	chr1:76344705-76379497	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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