Variant report

Variant	rs574671819
Chromosome Location	chr9:86535700-86535701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:86236616..86242493-chr9:86533666..86537484,7	MCF-7	breast:
2	chr9:86237285..86238795-chr9:86535469..86537545,2	K562	blood:
3	chr9:86533247..86537973-chr9:86593370..86597981,20	MCF-7	breast:
4	chr9:86431003..86433746-chr9:86534377..86536332,2	K562	blood:
5	chr9:86535234..86536021-chr9:86875727..86876675,2	MCF-7	breast:
6	chr9:86321176..86323111-chr9:86534764..86537575,5	MCF-7	breast:
7	chr9:86534503..86538702-chr9:86568820..86574555,7	MCF-7	breast:
8	chr9:86535347..86536164-chr9:86929967..86930640,3	MCF-7	breast:
9	chr9:86237271..86239294-chr9:86534482..86537409,3	MCF-7	breast:
10	chr9:86533593..86537892-chr9:86593047..86598677,10	K562	blood:
11	chr9:86534520..86537940-chr9:86592614..86595774,6	K562	blood:
12	chr9:86430622..86432919-chr9:86535075..86537489,2	MCF-7	breast:
13	chr9:86534003..86537844-chr9:86570557..86574103,8	K562	blood:
14	chr9:86534814..86537259-chr9:86954011..86956598,2	MCF-7	breast:
15	chr9:86531254..86532896-chr9:86534357..86536311,2	MCF-7	breast:
16	chr9:86535076..86537991-chr9:86590146..86593000,2	K562	blood:
17	chr1:28974640..28975500-chr9:86535654..86536400,2	Hela-S3	cervix:
18	chr9:86321510..86324086-chr9:86534187..86535894,2	K562	blood:
19	chr9:86529939..86532744-chr9:86534062..86535993,2	MCF-7	breast:
20	chr9:86533979..86537502-chr9:86594012..86596999,11	MCF-7	breast:
21	chr9:86535411..86537432-chr9:127629716..127632471,2	MCF-7	breast:
22	chr9:86534561..86538164-chr9:86570673..86573880,3	K562	blood:
23	chr9:86535600..86536226-chr9:86875793..86876638,2	K562	blood:
24	chr9:86321248..86324502-chr9:86534491..86537588,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165113	Chromatin interaction
ENSG00000165115	Chromatin interaction
ENSG00000136950	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000135018	Chromatin interaction
ENSG00000165118	Chromatin interaction
ENSG00000148057	Chromatin interaction
ENSG00000197506	Chromatin interaction
ENSG00000178966	Chromatin interaction
ENSG00000254473	Chromatin interaction
ENSG00000165119	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv438108	chr9:86488586-86542206	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86481000-86535800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:86535000-86535800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr9:86535000-86535800	Enhancers	Small Intestine	intestine
4	chr9:86535000-86535800	Flanking Active TSS	Dnd41	blood
5	chr9:86535000-86536400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:86535000-86536600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:86535000-86536800	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:86535000-86537000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:86535200-86535800	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr9:86535200-86535800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr9:86535200-86535800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:86535200-86535800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:86535200-86535800	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr9:86535200-86535800	Flanking Active TSS	HUVEC	blood vessel
15	chr9:86535200-86535800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr9:86535200-86535800	Flanking Active TSS	NH-A	brain
17	chr9:86535200-86535800	Flanking Active TSS	Osteobl	bone
18	chr9:86535200-86536000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:86535200-86536600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:86535200-86536600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr9:86535200-86536800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:86535200-86536800	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr9:86535200-86536800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:86535200-86536800	Active TSS	Brain Cingulate Gyrus	brain
25	chr9:86535200-86536800	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr9:86535200-86536800	Active TSS	K562	blood
27	chr9:86535200-86537000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr9:86535200-86537000	Active TSS	H1 Cell Line	embryonic stem cell
29	chr9:86535200-86537000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr9:86535200-86537000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:86535200-86537000	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr9:86535200-86537000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:86535200-86537000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:86535200-86537000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:86535200-86537000	Active TSS	Fetal Brain Female	brain
36	chr9:86535200-86537000	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr9:86535200-86537000	Active TSS	Fetal Muscle Trunk	muscle
38	chr9:86535400-86535800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr9:86535400-86535800	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr9:86535400-86535800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr9:86535400-86535800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:86535400-86535800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr9:86535400-86535800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr9:86535400-86535800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:86535400-86535800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr9:86535400-86535800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:86535400-86535800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr9:86535400-86535800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr9:86535400-86535800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr9:86535400-86535800	Flanking Active TSS	Adipose Nuclei	Adipose

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