Variant report

Variant	rs57473471
Chromosome Location	chr17:67486737-67486738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12948059	0.92[ASN][1000 genomes]
rs16974063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16974102	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57439413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58357732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60663624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66517015	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66963653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67260667	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67361810	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67953371	0.93[ASN][1000 genomes]
rs72850506	0.92[ASN][1000 genomes]
rs73363653	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73363661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73363663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
2	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:67470800-67488200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:67473400-67488600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr17:67479400-67497000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr17:67482000-67488600	Weak transcription	Fetal Muscle Leg	muscle
7	chr17:67482000-67488600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr17:67482000-67497000	Weak transcription	Right Atrium	heart
9	chr17:67482200-67497800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr17:67482800-67487200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:67482800-67488400	Weak transcription	A549	lung
12	chr17:67483000-67488600	Weak transcription	Psoas Muscle	Psoas
13	chr17:67483200-67496200	Weak transcription	Small Intestine	intestine
14	chr17:67483600-67488200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr17:67483600-67488600	Weak transcription	Colon Smooth Muscle	Colon
16	chr17:67483600-67497000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr17:67483800-67488200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr17:67483800-67488400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr17:67483800-67488600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr17:67484200-67492800	Weak transcription	Primary T cells from cord blood	blood
21	chr17:67484600-67488600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr17:67485000-67501800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr17:67485600-67486800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr17:67485800-67486800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr17:67486000-67486800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:67486200-67488400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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