Variant report

Variant	rs66517015
Chromosome Location	chr17:67495621-67495622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr17:67495518-67496030	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr17:67495428-67495907	PANC-1	pancreas:	n/a	n/a
3	STAT3	chr17:67495472-67495826	Hela-S3	cervix:	n/a	n/a
4	USF2	chr17:67495524-67495911	Hela-S3	cervix:	n/a	n/a
5	RCOR1	chr17:67495256-67495959	Hela-S3	cervix:	n/a	n/a
6	EP300	chr17:67495410-67495891	Hela-S3	cervix:	n/a	chr17:67495457-67495466
7	PRDM1	chr17:67495437-67495904	Hela-S3	cervix:	n/a	n/a
8	TCF7L2	chr17:67495523-67495922	Hela-S3	cervix:	n/a	n/a
9	JUND	chr17:67495390-67496141	Hela-S3	cervix:	n/a	n/a
10	CEBPB	chr17:67495357-67495893	Hela-S3	cervix:	n/a	n/a
11	BRCA1	chr17:67495466-67495802	Hela-S3	cervix:	n/a	n/a
12	CEBPB	chr17:67495498-67495724	A549	lung:	n/a	n/a
13	FOS	chr17:67495539-67495764	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
MAP2K6	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12948059	1.00[ASN][1000 genomes]
rs16974063	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16974102	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57439413	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57473471	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58357732	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60663624	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66963653	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67260667	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67361810	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67953371	0.99[ASN][1000 genomes]
rs72850506	1.00[ASN][1000 genomes]
rs73363653	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73363661	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73363663	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
2	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:67479400-67497000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:67482000-67497000	Weak transcription	Right Atrium	heart
5	chr17:67482200-67497800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:67483200-67496200	Weak transcription	Small Intestine	intestine
7	chr17:67483600-67497000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr17:67485000-67501800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr17:67486800-67497000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:67489000-67497000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:67489000-67497200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr17:67489200-67497400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr17:67490400-67497600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr17:67493600-67496800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr17:67493800-67497000	Weak transcription	Fetal Intestine Small	intestine
16	chr17:67494000-67496800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr17:67494000-67497400	Weak transcription	GM12878-XiMat	blood
18	chr17:67494200-67497000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr17:67494200-67497800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr17:67494600-67497200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:67494600-67497800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr17:67494800-67497000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr17:67495000-67496200	Weak transcription	Fetal Brain Male	brain
25	chr17:67495000-67496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr17:67495000-67496800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr17:67495000-67497000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr17:67495000-67497200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr17:67495000-67497600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr17:67495000-67497600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr17:67495200-67496800	Weak transcription	Fetal Kidney	kidney
33	chr17:67495200-67497000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr17:67495200-67497000	Weak transcription	Psoas Muscle	Psoas
35	chr17:67495200-67497200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr17:67495200-67497600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:67495400-67495800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr17:67495400-67497000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr17:67495400-67497000	Weak transcription	Primary T cells from cord blood	blood
40	chr17:67495400-67497000	Weak transcription	Colonic Mucosa	Colon
41	chr17:67495400-67497200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr17:67495600-67495800	Enhancers	Liver	Liver
43	chr17:67495600-67497000	Weak transcription	A549	lung
44	chr17:67495600-67497400	Weak transcription	Hela-S3	cervix

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